PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG022490.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Protein Properties

Length: 132aa MW: 15305.8 Da PI: 7.7759

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG022490.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	31.2	3.8e-10	7	96	1	88
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+l ++ + ++ l+lp + ++++ +g + d + ++W++ l+ +s+ ++l++ W +Fv+++gL D vvF +++++ CCG022490.1 7 FTKKL-KPTHISH-ALSLPTHALDAFpipEGA--HMMNFDAVDATDNVWRFCLSTrltGAYSKPVLLRSSWHRFVEQKGLAPEDRVVFFMQRDE 96 66777.4444555.4******999554333..345566778999***77675666666******************9999866654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	3.34E-11	3	100	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	2.1E-12	3	96	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.13E-9	5	96	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 132 aa Download sequence Send to blast
MEQLHIFTKK LKPTHISHAL SLPTHALDAF PIPEGAHMMN FDAVDATDNV WRFCLSTRLT 60 GAYSKPVLLR SSWHRFVEQK GLAPEDRVVF FMQRDEANDM IRRYTVRAQR KVMILMGQDI 120 WVDVEDLPLQ GL

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC216593	0.0	AC216593.1 Populus trichocarpa clone POP016-L16, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011007872.1	9e-96	PREDICTED: uncharacterized protein LOC105113407
TrEMBL	A0A3N7H3I5	6e-83	A0A3N7H3I5_POPTR; Uncharacterized protein
STRING	cassava4.1_027512m	2e-48	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13907	2	9