PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG022516.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 489aa    MW: 54093.5 Da    PI: 6.587
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG022516.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.92e-17137183148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEd +l+++vkq+G + W+ Ia+++  gR +kqc++rw+++l
      CCG022516.1 137 KGQWTEEEDRKLIRLVKQFGVKKWAQIAEKLD-GRAGKQCRERWHNHL 183
                      799*****************************.*************97 PP
2Myb_DNA-binding52.21.4e-16198240145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +++W++eE+ +lv a+++ G++ W+ Ia+ ++ gRt++ +k++w+
      CCG022516.1 198 KDSWSEEEERILVGAHTKVGNR-WAEIAKLIP-GRTENAIKNHWN 240
                      679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.747132187IPR017930Myb domain
SuperFamilySSF466897.91E-30135239IPR009057Homeodomain-like
SMARTSM007174.8E-17136185IPR001005SANT/Myb domain
PfamPF002494.0E-16137183IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-23138189IPR009057Homeodomain-like
CDDcd001673.08E-16140183No hitNo description
PROSITE profilePS5129419.512193247IPR017930Myb domain
SMARTSM007171.3E-14197245IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.8E-17197245IPR009057Homeodomain-like
PfamPF002494.6E-14198240IPR001005SANT/Myb domain
CDDcd001671.39E-11200243No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MEEGGGVGGR LGNRDLQNNR PNIYPPLTAI DRFLFGQSHF TPHQNIQNND KNKETTVSNN  60
GSCVFYPPSG AIGAVPWQSI QETSFVDGAI GVGGDDLHWT YEGNPNGGLN GKVSVSGKSS  120
KGIGKKTKKG SCAPLIKGQW TEEEDRKLIR LVKQFGVKKW AQIAEKLDGR AGKQCRERWH  180
NHLRPDIKVS SPFTSSRKDS WSEEEERILV GAHTKVGNRW AEIAKLIPGR TENAIKNHWN  240
ATKRRQNSRR KHKQKESQSG KTQSSILQDY IRSKNLKNAS TSTQSTTTTT KTPSSSISEE  300
PSSQNNYFLP ELSESNTDDS PSLLAQACND DELLFIQNFF ANKSKDPSTD KADMENPIME  360
VNSFNEDPFN DSLSLDSWGS YQNNGGQQLN DGNENGFVSS SLNPKLCTNG FQAAEDHTPT  420
YNHLHSDLYL SYLLNGASSA PCSSSTEYGC NSMDLDLEMD QTDSLNGKKE MDLIEMLCSS  480
QFSQGSNKI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C5e-441352462104C-Myb DNA-Binding Domain
1msf_C5e-441352462104C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00567DAPTransfer from AT5G58850Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011035335.10.0PREDICTED: transcription factor MYB98-like
TrEMBLB9GIJ30.0B9GIJ3_POPTR; Uncharacterized protein
STRINGPOPTR_0001s25710.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41293158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.11e-64myb domain protein 119