PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG022517.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

C2H2

Protein Properties

Length: 380aa MW: 42543.1 Da PI: 8.9804

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG022517.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.6	1e-05	142	165	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ Cg++F + +L++H+ + H CCG022517.1 142 FPCSVCGEVFQKPQLLEQHQAVkH 165 89******************9888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.785	142	170	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	144	165	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	6.81E-12	167	379	No hit	No description
Gene3D	G3DSA:3.90.228.10	1.3E-4	314	379	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence Send to blast
MAANTGSVFN KFLSFFILLL HLGCFIFKAK LDDRQPAKKR KKVSPLAPIS SSHSRLKPHK 60 ALSSSWSYLK SIFSGKTSKT QTQPAAPILT SARSSQQSIV SMILPDQTHL PELPPRKKST 120 GSCEESDIST DHQFFPLRND IFPCSVCGEV FQKPQLLEQH QAVKHAVTQL LDGDSGKNIV 180 DIIFKTGWSC KDKSPEIRRI LKIHNSPKIL SRFEEYREFV KAKAARNSPI KRRDERCIAD 240 GNELLRFYCS TFMCDLGLNG DSSICNQQYC SVCGIIKSGF SPKMDGISTL STSWRAHMAF 300 PEEIEEEFKF MNVKRAMLVC RVVAGRIGCD LEGDIDKQDR GSDSVLGRGG SGIHTRLDEE 360 ELLVFNPRAV LPCFVIVYTV

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence Send to blast

MAANTGSVFN KFLSFFILLL HLGCFIFKAK LDDRQPAKKR KKVSPLAPIS SSHSRLKPHK  60
ALSSSWSYLK SIFSGKTSKT QTQPAAPILT SARSSQQSIV SMILPDQTHL PELPPRKKST  120
GSCEESDIST DHQFFPLRND IFPCSVCGEV FQKPQLLEQH QAVKHAVTQL LDGDSGKNIV  180
DIIFKTGWSC KDKSPEIRRI LKIHNSPKIL SRFEEYREFV KAKAARNSPI KRRDERCIAD  240
GNELLRFYCS TFMCDLGLNG DSSICNQQYC SVCGIIKSGF SPKMDGISTL STSWRAHMAF  300
PEEIEEEFKF MNVKRAMLVC RVVAGRIGCD LEGDIDKQDR GSDSVLGRGG SGIHTRLDEE  360
ELLVFNPRAV LPCFVIVYTV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	37	41	KKRKK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011035183.1	0.0	PREDICTED: uncharacterized protein LOC105133068
TrEMBL	B9GIT8	0.0	B9GIT8_POPTR; C2H2 family protein
STRING	POPTR_0001s25700.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10668	29	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29660.1	1e-122	C2H2 family protein