PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG022528.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 306aa    MW: 34161.2 Da    PI: 9.78
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG022528.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.92e-072872345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     +WT+ E + + +a + +  +   +W+++a++++ g+t  +++  + 
      CCG022528.1 28 KWTPAENKAFENALAVYDEDtpdRWHKVAAMIP-GKTVGDVIKQYK 72
                     8********************************.****99988775 PP
2Myb_DNA-binding44.24.4e-14135179347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + k++G+g+W+ I+r +   Rt+ q+ s+ qky
      CCG022528.1 135 PWTEEEHKLFLMGLKKYGKGDWRNISRNFVISRTPTQVASHAQKY 179
                      8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.3E-42272IPR009057Homeodomain-like
PROSITE profilePS512938.7072479IPR017884SANT domain
SMARTSM007171.2E-82577IPR001005SANT/Myb domain
SuperFamilySSF466891.72E-102776IPR009057Homeodomain-like
CDDcd001671.63E-72874No hitNo description
PfamPF002494.8E-62872IPR001005SANT/Myb domain
PROSITE profilePS5129420.359128184IPR017930Myb domain
SuperFamilySSF466891.27E-16130183IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-17131183IPR006447Myb domain, plants
SMARTSM007175.6E-13132182IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-12132179IPR009057Homeodomain-like
CDDcd001673.23E-11135180No hitNo description
PfamPF002492.4E-12135179IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MKWETGILSP ASYLSSTNWL LEESKNTKWT PAENKAFENA LAVYDEDTPD RWHKVAAMIP  60
GKTVGDVIKQ YKELELDVSY IEAGLIPIPG YSTSPFTLDW VDGNGYDGFK QSYGLGGKRS  120
STGRPADQER KKGVPWTEEE HKLFLMGLKK YGKGDWRNIS RNFVISRTPT QVASHAQKYF  180
IRQLSGGKDK RRASIHDITT VNLNDARTPS PDNKRPSPDQ PGAISQQPNS AAMPRTHFQW  240
NQPNGGGTLA FNSTNANIFM SAPYGISSYG LKMQGQNLHR GAVHDSYIRQ QAMGFQMPSG  300
HHYPHG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-1829941176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011035198.10.0PREDICTED: transcription factor DIVARICATA
RefseqXP_011035199.10.0PREDICTED: transcription factor DIVARICATA
SwissprotQ8S9H71e-147DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLB9GIV00.0B9GIV0_POPTR; Uncharacterized protein
STRINGPOPTR_0001s25590.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-108MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]