PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG022571.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family G2-like
Protein Properties Length: 390aa    MW: 43647.2 Da    PI: 6.4428
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG022571.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.95.2e-29164217155
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  +prl+Wtp+LH+rFv++v +L G ++A+Pkti++ m+v+gLt+e+v+SHLQkYRl
  CCG022571.1 164 RPRLVWTPQLHKRFVDVVGHL-GMKNAVPKTIMQWMNVEGLTRENVASHLQKYRL 217
                  59*******************.9*******************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.24E-19161221IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-28163221IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-22165217IPR006447Myb domain, plants
PfamPF002499.0E-7167216IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MGEEVKMSEY EINDEDTINR DDERIGVWEM GLPTPYDLTP LSQPLIPPEL ASAFNISPEP  60
LRTPLDVNRA SQNTLSNLHG HLNALSSNNI KSFNETRGQT HDPMVVELEE EEEEEDVTEA  120
MDRDGSGSEA RKLRRIDSEE ADSALRTENW VDDPSSAAAR TLKRPRLVWT PQLHKRFVDV  180
VGHLGMKNAV PKTIMQWMNV EGLTRENVAS HLQKYRLYLK RKQGLSSEGP SASDQLFAST  240
PVPQSLHKSG GGSCGGGNFG MPIPVPYHHP ATTAGGMMPM PVYGHMGIQM VNDHVHNNNN  300
SNNYQHQQVS MNSHQNGYHG NVALLMGNKH VHNSSNKHQH QHQQVNTNCH QNGYNGNVAY  360
GHMFQQRDWN GTNYGPYSHH PHHAVSNDTM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A2e-31164220157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is essential for the generation of the circadian clock oscillation. Is necessary for activation of CCA1 and LHY expression. Is coregulated with TOC1 and seems to be repressed by CCA1 and LHY by direct binding of these proteins to the evening element in the LUX promoter. Directly regulates the expression of PRR9, a major component of the morning transcriptional feedback circuit, by binding specific sites on PRR9 promoter. Binds to its own promoter, inducing a negative auto-regulatory feedback loop within the core clock. Binds to ELF3 and associates with ELF4 in a diurnal complex which is required for the expression of the growth-promoting transcription factors PIF4 and PIF5 and subsequent hypocotyl growth in the early evening. {ECO:0000269|PubMed:16006522, ECO:0000269|PubMed:16164597, ECO:0000269|PubMed:21236673, ECO:0000269|PubMed:21753751, ECO:0000269|PubMed:22311777}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian oscillation with peaks at subjective dusk. {ECO:0000269|PubMed:16006522, ECO:0000269|PubMed:16164597, ECO:0000269|PubMed:17132630, ECO:0000269|PubMed:21753751}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2158500.0AC215850.1 Populus trichocarpa clone POP025-N09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011035272.10.0PREDICTED: transcription factor PCL1-like
RefseqXP_011035273.10.0PREDICTED: transcription factor PCL1-like
SwissprotQ9SNB46e-78PCL1_ARATH; Transcription factor LUX
TrEMBLA0A2K2C2Z10.0A0A2K2C2Z1_POPTR; Uncharacterized protein
STRINGPOPTR_0001s25040.11e-179(Populus trichocarpa)
STRINGPOPTR_0009s03990.11e-179(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69573347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46640.36e-78G2-like family protein
Publications ? help Back to Top
  1. Higham CF,Husmeier D
    A Bayesian approach for parameter estimation in the extended clock gene circuit of Arabidopsis thaliana.
    BMC Bioinformatics, 2013. 14 Suppl 10: p. S3
    [PMID:24267177]