PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG022586.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

MYB_related

Protein Properties

Length: 1039aa MW: 114463 Da PI: 8.9399

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG022586.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.5	2.6e-07	939	988	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ + + k+Rt ++k++w ++ CCG022586.1 939 RRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 988 6789999*****************9988889************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50053	9.047	749	819	IPR000626	Ubiquitin domain
PROSITE profile	PS51294	14.733	934	993	IPR017930	Myb domain
SMART	SM00717	2.0E-7	938	991	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.9E-10	939	989	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.36E-15	940	1021	IPR009057	Homeodomain-like
CDD	cd11660	3.87E-17	940	990	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1039 aa Download sequence Send to blast
MAGTCKFISR HVIELSTNNR ASRTWGGGGG ASFCWARISA MNSNGVSRTR EVALSPEGPS 60 CIFVGPIETA SQETLEALYC QARDAYYSGK PLIVDDMFDR VELKLRWYGS KSVVKYPRCS 120 LRRQSTYSDA EIIDMAVGQE DISQAFALAS IWILFLTIGS SACAFPIIYT IGLAYQDAFG 180 SGIANGSQAP IIRFLATVNG ILFMAVGSLI GYPIASASVK VLQGLWRNDL VALKGACPNC 240 GEEVFAFVKS DQSNNSPHRA DCHVCESLLE FRTKVEQTTS RAGRQWVYGR IYLKRLDYGF 300 NGYQVPHMPR ATRSARRRRS FKKKHEEDQM CAFDLLAIVA GKLLLDKESA PSSSNTSADK 360 YQCAVVNSAV KYEWQDEEKP LKVEACDQGS AARNFFVSDL PQVHGQGCSS KESLVTQNNL 420 NLRLASALTK SDSAGRSSAE KLRNDKSKND IGTFASKVEG VSSEYGEFGD CKLEVETKRA 480 VKDEPGKSGV VLSSTAADMC SLDDPVVLDA KPPALASLDS CAKVPLCRNH IPNSPNLTDR 540 DDVNVVSRDD DDNYSGCTHP ITKKKFFRPA PRIGDRRIRK ILASKYWKVA PKFKDATVSN 600 SYGDLKPVFH KRKNYYRQQR SERLYPFKKR KHYAYSSPSK LDGGLSCEFV SDSPRKGSNG 660 DASGSCSRMH GVTGASSSFV AQHASFQPWD SHGMRTFNGG ASSSFVGQRS SFQPRDCHGT 720 RTFNGLIDMY SFDLIGEDLT RRCLSFSSVK LRIKSFRVPE LLVEIPESST VGLLKRTVME 780 AVTAILGGGL RVGVLLQGKK VRDDNKTLLQ TGISHTNQLD SLGFCLEPNP SQTPPSLCPE 840 DSPFLLQCDT PDPLSRCPPT AGVVCQGICT GSPEPHLNNL GKCIESDRDS ASSPTDTSMD 900 QSTNSKALVA VPAMKVEALA VVPAHQKSKQ SEIVQRRIRR PFSVAEVEAL VQAVEKLGTG 960 RWRDVKLRAF DNAKHRTYVD LKDKWKTLVH TARISPQQRR GEPVPQELLD RVLTAHAYWS 1020 QQQANQQFKH QHAETCLLL

Sequence ? help Back to Top

Protein Sequence Length: 1039 aa Download sequence Send to blast

MAGTCKFISR HVIELSTNNR ASRTWGGGGG ASFCWARISA MNSNGVSRTR EVALSPEGPS  60
CIFVGPIETA SQETLEALYC QARDAYYSGK PLIVDDMFDR VELKLRWYGS KSVVKYPRCS  120
LRRQSTYSDA EIIDMAVGQE DISQAFALAS IWILFLTIGS SACAFPIIYT IGLAYQDAFG  180
SGIANGSQAP IIRFLATVNG ILFMAVGSLI GYPIASASVK VLQGLWRNDL VALKGACPNC  240
GEEVFAFVKS DQSNNSPHRA DCHVCESLLE FRTKVEQTTS RAGRQWVYGR IYLKRLDYGF  300
NGYQVPHMPR ATRSARRRRS FKKKHEEDQM CAFDLLAIVA GKLLLDKESA PSSSNTSADK  360
YQCAVVNSAV KYEWQDEEKP LKVEACDQGS AARNFFVSDL PQVHGQGCSS KESLVTQNNL  420
NLRLASALTK SDSAGRSSAE KLRNDKSKND IGTFASKVEG VSSEYGEFGD CKLEVETKRA  480
VKDEPGKSGV VLSSTAADMC SLDDPVVLDA KPPALASLDS CAKVPLCRNH IPNSPNLTDR  540
DDVNVVSRDD DDNYSGCTHP ITKKKFFRPA PRIGDRRIRK ILASKYWKVA PKFKDATVSN  600
SYGDLKPVFH KRKNYYRQQR SERLYPFKKR KHYAYSSPSK LDGGLSCEFV SDSPRKGSNG  660
DASGSCSRMH GVTGASSSFV AQHASFQPWD SHGMRTFNGG ASSSFVGQRS SFQPRDCHGT  720
RTFNGLIDMY SFDLIGEDLT RRCLSFSSVK LRIKSFRVPE LLVEIPESST VGLLKRTVME  780
AVTAILGGGL RVGVLLQGKK VRDDNKTLLQ TGISHTNQLD SLGFCLEPNP SQTPPSLCPE  840
DSPFLLQCDT PDPLSRCPPT AGVVCQGICT GSPEPHLNNL GKCIESDRDS ASSPTDTSMD  900
QSTNSKALVA VPAMKVEALA VVPAHQKSKQ SEIVQRRIRR PFSVAEVEAL VQAVEKLGTG  960
RWRDVKLRAF DNAKHRTYVD LKDKWKTLVH TARISPQQRR GEPVPQELLD RVLTAHAYWS  1020
QQQANQQFKH QHAETCLLL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2juh_A	1e-55	923	1039	1	112	Telomere binding protein TBP1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	317	323	RRSFKKK
2	610	630	KRKNYYRQQRSERLYPFKKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Binds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC208932	0.0	AC208932.1 Populus trichocarpa clone JGIACSB1081-D10, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011035292.1	0.0	PREDICTED: telomere repeat-binding protein 5-like isoform X1
Swissprot	Q6R0E3	1e-138	TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBL	B9GJM2	0.0	B9GJM2_POPTR; Uncharacterized protein
STRING	POPTR_0001s24840.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1356	28	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07540.1	1e-112	TRF-like 2