PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG022647.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

ERF

Protein Properties

Length: 245aa MW: 26432.2 Da PI: 6.9631

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG022647.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	58.7	1.4e-18	87	136	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ +g+Wv+eIr+p++ + r++lg++ tae+Aa+a++ a+++++g CCG022647.1 87 TYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAALAIKG 136 69**998.******843...6********************99887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	1.5E-31	87	145	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.235	87	144	IPR001471	AP2/ERF domain
SMART	SM00380	5.1E-36	87	150	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.03E-21	87	144	IPR016177	DNA-binding domain
Pfam	PF00847	8.3E-13	87	136	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.9E-10	88	99	IPR001471	AP2/ERF domain
CDD	cd00018	7.31E-33	88	145	No hit	No description
PRINTS	PR00367	1.9E-10	110	126	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MGKHINLETD AQDNSLASSS TTTSTTKGNI SSSSTPISCI KYRGSKKEEN SIAPRVSGKA 60 QELQSSGNEG GKRRKTAENE KNGKHPTYRG VRMRSWGKWV SEIREPRKKS RIWLGTYPTA 120 EMAARAHDVA ALAIKGGSAY LNFPEFAHEL PPPLSKSPKD IQAAAAKAAA ASFNETRYCE 180 GEGGGEAELN VSNLSDSLAM DNTQESSSTP STESDDTLFD LPDLFIDGVH HSTGMDFAIF 240 LHHGN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	7e-17	84	144	11	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF155930	0.0	EF155930.1 Populus trichocarpa TINY-like protein (TINYL11) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011016474.1	0.0	PREDICTED: ethylene-responsive transcription factor ERF038-like
Swissprot	Q8LBQ7	4e-52	ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBL	A0A2K2BIP1	1e-133	A0A2K2BIP1_POPTR; Uncharacterized protein
STRING	POPTR_0002s14210.1	1e-133	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF192	34	263

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44940.1	2e-48	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]