PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG022664.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

WRKY

Protein Properties

Length: 312aa MW: 34827.4 Da PI: 6.9573

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG022664.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	108.8	2.5e-34	170	227	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+vers +dp++v++tYeg+Hnh+ CCG022664.1 170 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCTVKKRVERSFQDPSIVITTYEGQHNHP 227 8********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.2E-35	154	229	IPR003657	WRKY domain
SuperFamily	SSF118290	5.1E-30	161	229	IPR003657	WRKY domain
PROSITE profile	PS50811	32.765	164	229	IPR003657	WRKY domain
SMART	SM00774	4.1E-40	169	228	IPR003657	WRKY domain
Pfam	PF03106	1.0E-26	170	227	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MSNERRDFYY HTPFQEDHLD VKPPSILGSS TYNRSPGQGL DPSSYMSLTE CLHGSVDYNS 60 LAKAFGLSPS SSEVFSSIEE NSKPVEARDL DGGNSTDQVP ATPNSSVSFS SSEAGCDEDS 120 GKTKKETQTE KPEDGGENSD KKDKAKKKAE KRQKEPRFAF MTKSEVDHLE DGYRWRKYGQ 180 KAVKNSPYPR SYYRCTTQKC TVKKRVERSF QDPSIVITTY EGQHNHPIPT TLRGSASAMF 240 SHSMLAPAPM ASGPSFPHHQ GYNFVQIPAA MNNQNMGAYP QNVNQHVHQQ YQVPDYGLLQ 300 DIVPSIFLGH EP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	5e-29	159	229	7	77	Probable WRKY transcription factor 4
2lex_A	5e-29	159	229	7	77	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ377449	0.0	GQ377449.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 29 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011008002.1	0.0	PREDICTED: probable WRKY transcription factor 28
Swissprot	Q8VWJ2	1e-77	WRK28_ARATH; WRKY transcription factor 28
TrEMBL	U5GX71	0.0	U5GX71_POPTR; Uncharacterized protein
STRING	POPTR_0001s34520.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2231	34	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18170.1	3e-59	WRKY DNA-binding protein 28

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kim SH, et al. Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis. Mol. Cells, 2014. 37(11): p. 833-40 [PMID:25358503] Zhao L, et al. KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(3): p. E526-E535 [PMID:29288215]