PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG022706.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

ERF

Protein Properties

Length: 253aa MW: 27857.7 Da PI: 6.3103

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG022706.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	56.5	6.7e-18	71	121	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr + +g+Wv+eIr p++ + r++lg+f t+e+Aa+a++ a++ ++g CCG022706.1 71 PSYRGVRMRQ-WGKWVSEIRQPKK---KSRIWLGTFPTPEMAARAHDVAALTIKG 121 57***998.******854...6********************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	3.2E-12	71	121	IPR001471	AP2/ERF domain
CDD	cd00018	2.16E-34	71	131	No hit	No description
SuperFamily	SSF54171	3.01E-21	72	130	IPR016177	DNA-binding domain
PROSITE profile	PS51032	23.09	72	129	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	4.6E-32	72	130	IPR001471	AP2/ERF domain
SMART	SM00380	3.3E-38	72	135	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.0E-10	73	84	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.0E-10	95	111	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
METSLNTQCD ALTSTFSSSS ITSASSSFPS PMKNSRKQDQ SQDSSKRNQD PKNSNEGNRK 60 AKSGGNAGRH PSYRGVRMRQ WGKWVSEIRQ PKKKSRIWLG TFPTPEMAAR AHDVAALTIK 120 GSSAHLNFPE LAHEFPRPAS SSPKDIQAAA ALAAALSCKT SQKGRETEAE DELMLPHSPD 180 STLAVASNET QEYSLSSPLR DDGDDTFIDL PDILQDHQFD EFCYLSSWQL VGAETSDIGF 240 WHHEEPSGNI PFK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	8e-17	65	135	7	75	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF155927	0.0	EF155927.1 Populus trichocarpa TINY-like protein (TINYL8) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011001450.1	0.0	PREDICTED: ethylene-responsive transcription factor ERF039-like
Swissprot	Q8LBQ7	7e-53	ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBL	A0A2K2BY83	1e-155	A0A2K2BY83_POPTR; Uncharacterized protein
STRING	POPTR_0001s15550.1	1e-154	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF192	34	263

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44940.1	4e-50	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]