PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG022768.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

G2-like

Protein Properties

Length: 287aa MW: 32285.2 Da PI: 9.4318

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG022768.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103	1.8e-32	33	86	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH++Fv+av++LGG+++AtPk +l++m+v++Lt++hvkSHLQ+YR+ CCG022768.1 33 PRLRWTPDLHHCFVHAVDRLGGEDRATPKMVLQIMDVEDLTISHVKSHLQMYRS 86 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.4E-31	29	88	IPR009057	Homeodomain-like
PROSITE profile	PS51294	9.795	29	89	IPR017930	Myb domain
SuperFamily	SSF46689	5.2E-15	31	87	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.3E-24	33	87	IPR006447	Myb domain, plants
Pfam	PF00249	2.4E-6	34	85	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MRNTERRSVG VNFQEIGLRP SAIVRPYVRS KMPRLRWTPD LHHCFVHAVD RLGGEDRATP 60 KMVLQIMDVE DLTISHVKSH LQMYRSMKHE RMIQEAAMEA KKNGKEPRMH HSNYLSHTMC 120 CQQNRLNGKR LIDNKALLYQ GCGVHNPADG LALKNASLTS QSFRGCKQAY VTLGTLNIVI 180 KITLCWLVNL VTKIASEESE QKPDTYIIFN DLLESCVSKE TNDQDKMSAG ATGCKKSHQS 240 LEELTEIAQR IDGDRTSLSL NLNVSKPLLK LSKAKNSSGV SLELTLA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	3e-19	34	89	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	3e-19	34	89	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	3e-19	34	89	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-19	34	89	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-19	34	89	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-19	34	89	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	3e-19	34	89	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	3e-19	34	89	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	3e-19	34	89	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	3e-19	34	89	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	3e-19	34	89	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	3e-19	34	89	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011008035.1	1e-156	PREDICTED: uncharacterized protein LOC105113531
TrEMBL	A0A3N7GI35	1e-166	A0A3N7GI35_POPTR; Uncharacterized protein
STRING	POPTR_0021s00420.1	8e-93	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9381	28	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02060.1	1e-31	G2-like family protein