PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG022771.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 122aa    MW: 14474.9 Da    PI: 11.2988
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG022771.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.33.6e-10990483
                 E-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
           B3  4 vltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFk 83
                    +++  +++r+ +p+k +e++    g+  + +  + +d+ g++W +k+++   ++ ++ ++++ W+++++++gLk gD v + 
  CCG022771.1  9 SV-SKSDATNNRMEFPRKSLENFpipAGQ--NYFNFVAMDTLGQRWGFKVSIrnVGRYRKPWMSGQWRRYAREKGLKKGDRVKLI 90
                 44.455556678********888877444..4578999************884333344499******************88765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508638.8395107IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.8E-12690IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-11792IPR015300DNA-binding pseudobarrel domain
CDDcd100172.00E-118113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MEKVAMEKSV SKSDATNNRM EFPRKSLENF PIPAGQNYFN FVAMDTLGQR WGFKVSIRNV  60
GRYRKPWMSG QWRRYAREKG LKKGDRVKLI MHVEGNAVRS YRIMAERKLT MRIWIPVEDF  120
AR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011008037.13e-86PREDICTED: uncharacterized protein LOC105113533
TrEMBLU7DZ155e-77U7DZ15_POPTR; Uncharacterized protein
STRINGPOPTR_0183s00210.19e-78(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2309423