PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG022835.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 203aa    MW: 23140.2 Da    PI: 8.9274
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG022835.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding612.5e-191865148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +l+++v+ +G ++Wkt+a + g++R++k+c++rw +yl
      CCG022835.1 18 KGAWTAEEDNKLAHCVEVHGARRWKTVALKSGLNRCGKSCRLRWMNYL 65
                     79********************************************97 PP
2Myb_DNA-binding48.71.8e-1571116148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ + +E++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l
      CCG022835.1  71 RGNISCDEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 116
                      5677779***************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.5821365IPR017930Myb domain
SMARTSM007171.1E-141767IPR001005SANT/Myb domain
SuperFamilySSF466891.87E-2917112IPR009057Homeodomain-like
PfamPF002494.2E-171865IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-231972IPR009057Homeodomain-like
CDDcd001675.60E-112065No hitNo description
PROSITE profilePS5129424.9266120IPR017930Myb domain
SMARTSM007177.7E-1470118IPR001005SANT/Myb domain
PfamPF002497.4E-1471116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2473120IPR009057Homeodomain-like
CDDcd001672.44E-1077116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010090Biological Processtrichome morphogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0048629Biological Processtrichome patterning
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MAPKNTVTDA STKKVMSKGA WTAEEDNKLA HCVEVHGARR WKTVALKSGL NRCGKSCRLR  60
WMNYLRPNIK RGNISCDEED LIIRLHKLLG NRWSLIAGRL PGRTDNEIKN YWNSHLSKKI  120
IDQTQKEKMP DQPSTPLATM HQKTSDAIQV EEEGSAREAW NLETGNFDVD EFFDFSAEGS  180
YWVDKSLQLD GDSVAHRSPI VKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-27161205108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011032038.11e-151PREDICTED: trichome differentiation protein GL1-like
TrEMBLB9GYD51e-131B9GYD5_POPTR; Uncharacterized protein
STRINGPOPTR_0003s07680.11e-132(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21483288
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.17e-55myb domain protein 5