PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG022948.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family CO-like
Protein Properties Length: 553aa    MW: 59945.6 Da    PI: 5.7321
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG022948.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.91.5e-06244339
     zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                 e +C+ ++ +++  +C+ ++  lC  C  + H+       H++
  CCG022948.1  2 ESVCDFCGVEKAVVYCKPDSAKLCVHCDGSVHSAnflsrrHRR 44
                 579*****999*********************65777777876 PP
2CCT54.54.1e-19371412142
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvk 42 
                  R++a++RY+eK+ktR F+K+irY+sRKa+A++R+RvKG + +
  CCG022948.1 371 RDKAKMRYNEKKKTRTFSKQIRYASRKARADTRKRVKGYYIS 412
                  899***********************************8876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.0E-10147IPR000315B-box-type zinc finger
PROSITE profilePS501199.826147IPR000315B-box-type zinc finger
PfamPF006431.9E-5344IPR000315B-box-type zinc finger
CDDcd000214.76E-6447No hitNo description
PROSITE profilePS5147311.284369475IPR002902Gnk2-homologous domain
PfamPF062031.2E-13371412IPR010402CCT domain
PROSITE profilePS5101713.265371413IPR010402CCT domain
PfamPF016579.0E-6382472IPR002902Gnk2-homologous domain
PROSITE profilePS5147311.347481553IPR002902Gnk2-homologous domain
PfamPF016574.1E-6496553IPR002902Gnk2-homologous domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MESVCDFCGV EKAVVYCKPD SAKLCVHCDG SVHSANFLSR RHRRSLLCDK CSSLPAVARC  60
LDEKLSVCQG CDCSANGCSS LGHQLRALNC YTGCYSLAEF SKIWSSVLEG SSSGGFDSGW  120
DSLNSAPINE NCTSSCLEQR DNEGSFGLFT GKLNVLESCS KLEPWRGPPS IIMPNPNYIP  180
CCRDQVPMFP EVTNLPKDIG LPDGEDLCEG LNLDDIPLDF ENSNEIFSCS ESQSKYQFGD  240
AGKDCMLMEK NLSSVTGSNG PIENAIEVSS SGQLECVAFQ SSCVSGPASA MQTVSGNANC  300
SIFTNPSCSR NLNLGFPAVS GQVRSSMSLP LSNIIGESSA ADYQDCGLSP LFLTGESPWE  360
SHLDASSPQA RDKAKMRYNE KKKTRTFSKQ IRYASRKARA DTRKRVKGYY ISTVGLGQNL  420
NLVYGLKNCP GFTPKEVCHN CANSVATKII QRCPHQKVAF VFNESSLLQY SDLPFFSTAD  480
VAIKLVFLSL QNAEDPVLFR SQLGSLLGNI SSNAAADTSR LADGRTSYTS SIDIYAMVQC  540
TRNLTGDECL RCL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2134170.0AC213417.1 Populus trichocarpa clone POP018-J23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011003219.10.0PREDICTED: putative zinc finger protein CONSTANS-LIKE 11
TrEMBLA0A3N7GRW20.0A0A3N7GRW2_POPTR; Uncharacterized protein
STRINGPOPTR_0017s06660.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70521923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21880.14e-88B-box type zinc finger protein with CCT domain