PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG022955.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

GeBP

Protein Properties

Length: 498aa MW: 54740.6 Da PI: 4.6547

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG022955.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	111	7.8e-35	147	241	3	97
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 +qrlws+eDeiv+L G+++++ ++gk+p++d +f+ fvkks++++++++q+++KirrLKkK+ ++v+k +++ + fsk+hd ++ el+kkiWg CCG022955.1 147 PQRLWSDEDEIVMLNGMVEYQIEKGKNPFADNGDFHGFVKKSLNVDATNNQFLDKIRRLKKKYFTDVEKNEKEIDEIFSKPHDLECVELAKKIWG 241 69*****************************************************************99*********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.2E-29	148	241	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 498 aa Download sequence Send to blast
MARRRPFEVA PPAVSSSEEE EETDDEEETP KGTVQAQQDS TGEKQNDNEN GSEDDNDDDD 60 DNDDEEEKEK PNLLPSKPSK PDSESASETD SEDTESTQPP SPSLSGFTIK PISPKRKPGP 120 KLERPKKEND GEDKKTKRGA GAGGGGPQRL WSDEDEIVML NGMVEYQIEK GKNPFADNGD 180 FHGFVKKSLN VDATNNQFLD KIRRLKKKYF TDVEKNEKEI DEIFSKPHDL ECVELAKKIW 240 GAGGIEMGKK GNFNKKSGKN VSSGGEGEGG GGVGGGGITL ALPKKGNEEA NGEKGKLSVN 300 KGKRGSNEEV KVEGKEGDLK KKRQGLDGEA DEGVAGNVKK GKRGLSEEVN GEGKGKGVKR 360 EKRAADEEMS GQGEEVNVIV KKQRRLVNDE INGGGMELSV KKRNAVANEE LDREEAGSED 420 FWDKYPYLRL ALDGEILPEY LKERTILALG MVGEEKLVEL EREWRSLMKA KLEFIVMQKD 480 LIAKQIKLSL EAMNSQDS

Sequence ? help Back to Top

Protein Sequence Length: 498 aa Download sequence Send to blast

MARRRPFEVA PPAVSSSEEE EETDDEEETP KGTVQAQQDS TGEKQNDNEN GSEDDNDDDD  60
DNDDEEEKEK PNLLPSKPSK PDSESASETD SEDTESTQPP SPSLSGFTIK PISPKRKPGP  120
KLERPKKEND GEDKKTKRGA GAGGGGPQRL WSDEDEIVML NGMVEYQIEK GKNPFADNGD  180
FHGFVKKSLN VDATNNQFLD KIRRLKKKYF TDVEKNEKEI DEIFSKPHDL ECVELAKKIW  240
GAGGIEMGKK GNFNKKSGKN VSSGGEGEGG GGVGGGGITL ALPKKGNEEA NGEKGKLSVN  300
KGKRGSNEEV KVEGKEGDLK KKRQGLDGEA DEGVAGNVKK GKRGLSEEVN GEGKGKGVKR  360
EKRAADEEMS GQGEEVNVIV KKQRRLVNDE INGGGMELSV KKRNAVANEE LDREEAGSED  420
FWDKYPYLRL ALDGEILPEY LKERTILALG MVGEEKLVEL EREWRSLMKA KLEFIVMQKD  480
LIAKQIKLSL EAMNSQDS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011003224.1	0.0	PREDICTED: mediator-associated protein 1-like
TrEMBL	B9HE52	0.0	B9HE52_POPTR; Uncharacterized protein
STRING	POPTR_0007s02800.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF20654	3	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61730.1	1e-24	DNA-binding storekeeper protein-related transcriptional regulator