PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG022958.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 112aa    MW: 12808.6 Da    PI: 7.5239
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG022958.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3421.7e-1335962989
                 -..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS
           B3 29 kkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr.se 89
                 +  + + lt +d++gr+We+kl+ r++++    v+++GW ++v+++gL ++D+++++++ + ++
  CCG022958.1 35 E--NAISLTARDPTGRVWEFKLSTRNHGRYnkPVIRGGWLKYVREKGLTVNDSIILTMVADeEN 96
                 3..456799*************98777666779************************8876333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-11595IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-12896IPR015300DNA-binding pseudobarrel domain
CDDcd100173.64E-13891No hitNo description
PfamPF023621.1E-103696IPR003340B3 DNA binding domain
PROSITE profilePS508638.82540106IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    Send to blast
MEIELVNKKL TTTDIESRLS YPTGNLWPFQ MVQGENAISL TARDPTGRVW EFKLSTRNHG  60
RYNKPVIRGG WLKYVREKGL TVNDSIILTM VADEENGVSY NIRVEPNLEL AI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011003253.18e-78PREDICTED: uncharacterized protein LOC105110050
TrEMBLB9PEP31e-70B9PEP3_POPTR; Uncharacterized protein
STRINGPOPTR_0007s02830.12e-71(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14473313