PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG023101.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 124aa    MW: 14144.6 Da    PI: 10.68
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG023101.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.12.8e-12689386
                 EE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-S CS
           B3  3 kvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldg 86
                 k lt+ d    +r++lp k+++     +g++ +  +    desg +W+++++ rkk+    vl+kGW  Fv+ ++Lk+gD v F  ++
  CCG023101.1  6 KLLTKTDIR--KRFSLPTKCFKPLpslKGSHVR--DFPAIDESGFVWTFQCSTRKKGHPkPVLSKGWLAFVRHKELKVGDRVKFFKEK 89
                 555444433..458*****99888977555555..68889***********765554447**********************997444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100172.59E-14492No hitNo description
SuperFamilySSF1019366.67E-13493IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-154106IPR015300DNA-binding pseudobarrel domain
PfamPF023627.5E-9689IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MAEFSKLLTK TDIRKRFSLP TKCFKPLPSL KGSHVRDFPA IDESGFVWTF QCSTRKKGHP  60
KPVLSKGWLA FVRHKELKVG DRVKFFKEKD QSGPATPFYR VEAEKEIKIF GVIFGYSPIV  120
APSP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011025074.19e-86PREDICTED: B3 domain-containing transcription factor NGA4-like
TrEMBLB9I5A05e-79B9I5A0_POPTR; Uncharacterized protein
STRINGPOPTR_0012s02040.19e-80(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2060778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.18e-08B3 family protein