PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG023102.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 122aa    MW: 13703.2 Da    PI: 10.9754
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG023102.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.12.1e-15498196
                 EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEE CS
           B3  1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sefelvvk 95
                 f k+l++ dv k  rl++p k++++    +g+  + ++ + +desg +W +k++ r+++    vlt+GW  Fv  ++Lk+gD v F+  ++  ++    +
  CCG023102.1  4 FAKILSKTDVQK--RLSVPTKYLSSLpsfNGD--RAVEFQAMDESGCVWAFKCSTRRTRHPkPVLTRGWLAFVACKNLKAGDKVAFYKLKNkCRA--ATH 97
                 789997777776..59*******999*87555..7889***************7655544479************************55552333..444 PP

                 E CS
           B3 96 v 96
                 v
  CCG023102.1 98 V 98
                 4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.0792102IPR003340B3 DNA binding domain
SuperFamilySSF1019368.63E-15499IPR015300DNA-binding pseudobarrel domain
PfamPF023621.8E-12499IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.6E-184106IPR015300DNA-binding pseudobarrel domain
CDDcd100171.30E-184100No hitNo description
SMARTSM010191.1E-64104IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MENFAKILSK TDVQKRLSVP TKYLSSLPSF NGDRAVEFQA MDESGCVWAF KCSTRRTRHP  60
KPVLTRGWLA FVACKNLKAG DKVAFYKLKN KCRAATHVCK VRVAKQVKIF GSVFGHSPIR  120
AP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011025075.11e-86PREDICTED: B3 domain-containing transcription factor NGA4-like
TrEMBLA0A3N7FU952e-83A0A3N7FU95_POPTR; Uncharacterized protein
STRINGPOPTR_0012s02080.11e-66(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2060778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.11e-08B3 family protein