PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG023130.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Nin-like
Protein Properties Length: 261aa    MW: 30428.9 Da    PI: 6.3165
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG023130.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK79.92.8e-25153200552
       RWP-RK   5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                  ++le+++++F++pi++AA+e++v+lTvLK++CR++ I+RWPhRkiksl
  CCG023130.1 153 LELEEIQRHFNMPITQAAREMKVGLTVLKKRCRELRIMRWPHRKIKSL 200
                  899*******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.722131221IPR003035RWP-RK domain
PfamPF020421.9E-22153200IPR003035RWP-RK domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MDSTRYQLIV PKMENPLDFD AWVLDGQDIF SKISELPPLE SLFEPLNLPP FVPYDKNFNG  60
FKNNEDISND NIFSESNLDS WYNRENVIDT KPVINPGIQY PSYSLNLDNS VIKSELLNEV  120
SMMLVQSDCA SSSSMKEEEE VRKMSGRKRS VGLELEEIQR HFNMPITQAA REMKVGLTVL  180
KKRCRELRIM RWPHRKIKSL TSLINNVKEM GLSEYEAIML EEHKRLIEEL PDLELTERTK  240
KLRQACFKAN YKKRRLSAAY S
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011024851.10.0PREDICTED: protein RKD4-like
TrEMBLB9I1X31e-160B9I1X3_POPTR; Uncharacterized protein
STRINGPOPTR_0012s02390.11e-161(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68983247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53040.15e-41RWP-RK domain-containing protein