PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG023155.2

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

YABBY

Protein Properties

Length: 165aa MW: 18330 Da PI: 8.8543

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG023155.2	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	210.3	6.6e-65	4	157	4	170
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssekl 101 + se+vCyv+CnfCnt+lavsvPs+sl+++vtvrCGhC +llsvn+ + q+l+ ++ ++ +ll+ + + + s+s+ ++++ CCG023155.2 4 DVVSERVCYVHCNFCNTVLAVSVPSSSLLSIVTVRCGHCGNLLSVNMGGSLQTLPLQDL-QK---LHLLNSE--------DLSKDSGSSSKPNKVTA- 88 6789*************************************************9994.22...2222222........22222222222222222. PP YABBY 102 senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + ++e pr+ p+ PekrqrvPsaynrfikeeiqrika+nPdishreafs+aaknWahfP+ihfgl CCG023155.2 89 FKPAEQEPPRMSPMRPAPEKRQRVPSAYNRFIKEEIQRIKACNPDISHREAFSTAAKNWAHFPHIHFGL 157 34567899999997777************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.2E-71	6	157	IPR006780	YABBY protein
SuperFamily	SSF47095	5.89E-8	98	150	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.2E-4	107	149	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development
GO:0010158	Biological Process	abaxial cell fate specification

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence Send to blast
MALDVVSERV CYVHCNFCNT VLAVSVPSSS LLSIVTVRCG HCGNLLSVNM GGSLQTLPLQ 60 DLQKLHLLNS EDLSKDSGSS SKPNKVTAFK PAEQEPPRMS PMRPAPEKRQ RVPSAYNRFI 120 KEEIQRIKAC NPDISHREAF STAAKNWAHF PHIHFGLKLD SDKHP

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011024888.1	1e-121	PREDICTED: putative axial regulator YABBY 2 isoform X1
Swissprot	Q9XFB0	2e-70	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A2K2C1G2	3e-94	A0A2K2C1G2_POPTR; Uncharacterized protein
STRING	EOY33226	1e-87	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1124	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	7e-56	YABBY family protein

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]