PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG023176.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

G2-like

Protein Properties

Length: 365aa MW: 40489.9 Da PI: 9.663

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG023176.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100	1.6e-31	62	115	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+ave+LGG e+AtPk +l+lm++kgL+++hvkSHLQ+YR+ CCG023176.1 62 PRLRWTPDLHLCFVQAVERLGGYERATPKLVLQLMNIKGLSIAHVKSHLQMYRS 115 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.1E-30	58	116	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.715	58	118	IPR017930	Myb domain
SuperFamily	SSF46689	1.2E-14	60	116	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.7E-23	62	117	IPR006447	Myb domain, plants
Pfam	PF00249	9.6E-9	63	114	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
MKLGSDQKGD GLMMDASGKS KDGEGDNESK TKNSASSSNS IVDESEKASS SGVRPYVRSK 60 VPRLRWTPDL HLCFVQAVER LGGYERATPK LVLQLMNIKG LSIAHVKSHL QMYRSKKIDD 120 QGQVIDSRGD LIGCSGYYSH NFWQHSLLPN IDHNRSSDFR SRSVSRSTGH GNWITSPSVL 180 GPDSMNIRSG AGFYNSISER INGEIGSSTR RGSFHTCNNS TFTDQRRKLK QEFLDNESHQ 240 PMYNGNSIQG QISSTTKQPS FAAQFSKRGG DSNESISLET KWSFNAEKSN KPKRKADDLD 300 LSLSLSLSTR SKEKEVRRSL SWDEEDEGSN LSLSLSSTST KESNSIYLSM PSKYPKLAST 360 LDLTM

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

MKLGSDQKGD GLMMDASGKS KDGEGDNESK TKNSASSSNS IVDESEKASS SGVRPYVRSK  60
VPRLRWTPDL HLCFVQAVER LGGYERATPK LVLQLMNIKG LSIAHVKSHL QMYRSKKIDD  120
QGQVIDSRGD LIGCSGYYSH NFWQHSLLPN IDHNRSSDFR SRSVSRSTGH GNWITSPSVL  180
GPDSMNIRSG AGFYNSISER INGEIGSSTR RGSFHTCNNS TFTDQRRKLK QEFLDNESHQ  240
PMYNGNSIQG QISSTTKQPS FAAQFSKRGG DSNESISLET KWSFNAEKSN KPKRKADDLD  300
LSLSLSLSTR SKEKEVRRSL SWDEEDEGSN LSLSLSSTST KESNSIYLSM PSKYPKLAST  360
LDLTM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	5e-18	63	117	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	5e-18	63	117	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	5e-18	63	117	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	5e-18	63	117	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC210342	3e-77	AC210342.1 Populus trichocarpa clone POP091-B06, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011024915.1	0.0	PREDICTED: probable transcription factor KAN2 isoform X2
TrEMBL	B9GGQ9	0.0	B9GGQ9_POPTR; Uncharacterized protein
STRING	POPTR_0001s28690.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF16555	4	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	4e-42	G2-like family protein