PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG023339.3
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 826aa    MW: 92546.4 Da    PI: 8.7757
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG023339.3genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding551.8e-171360148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+l+++++ +G g+W+++++  g+ R++k+c++rw +yl
      CCG023339.3 13 RGLWSPEEDEKLIKYITTHGHGSWSSVPNLAGLERCGKSCRLRWINYL 60
                     788*******************************************97 PP
2Myb_DNA-binding45.12.2e-1466109146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+ E+ +++d ++ lG++ W+ Ia++++ gRt++++k++w++
      CCG023339.3  66 RGSITAKEERIIIDIHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109
                      7889******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-25463IPR009057Homeodomain-like
PROSITE profilePS5129424.45864IPR017930Myb domain
SuperFamilySSF466891.87E-2811107IPR009057Homeodomain-like
SMARTSM007172.0E-131262IPR001005SANT/Myb domain
PfamPF002492.1E-151360IPR001005SANT/Myb domain
CDDcd001671.90E-101660No hitNo description
Gene3DG3DSA:1.10.10.601.2E-2364116IPR009057Homeodomain-like
PROSITE profilePS5129419.65665115IPR017930Myb domain
SMARTSM007172.2E-1465113IPR001005SANT/Myb domain
PfamPF002491.6E-1266109IPR001005SANT/Myb domain
CDDcd001674.86E-1070108No hitNo description
SuperFamilySSF509782.17E-17546651IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.101.2E-16594790IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003208.1676715IPR001680WD40 repeat
PROSITE profilePS502949.837683770IPR017986WD40-repeat-containing domain
SuperFamilySSF509782.17E-17684798IPR017986WD40-repeat-containing domain
SMARTSM003202.2720761IPR001680WD40 repeat
PfamPF004000.0089724761IPR001680WD40 repeat
PROSITE profilePS500829.272727770IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 826 aa     Download sequence    Send to blast
MGHQCCRKQK VKRGLWSPEE DEKLIKYITT HGHGSWSSVP NLAGLERCGK SCRLRWINYL  60
RPDLKRGSIT AKEERIIIDI HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLIAQGL  120
DPNTHNLLST NYKQNNDNNA WKLSYHSQQQ PTSTFTMNSQ ISGISSMVMK APPIPFPMIP  180
LAPDTNPRLS HEFSSILTYE YQNPKMQAFL ESTASQSSIG SIPIFSSTSH PSEFGMLDES  240
CMWAGGYEPI QSIIPETKQP ERQVEIEKIT KLPGFYYDKE KNRYFPLKGP IPGSSRSSSS  300
SNNAKKPSTN NTQESNFFRR TGVRISQLLQ GRELNGNVIT SRKGKCDFVE EFLKIQASQP  360
VVWKYRSTEK IADSAMDQIH IDIHTAEGQT EANVLITGGV NGSLSLFEVG KAGEHNHGVE  420
CIPDRMWPVI EEKRAESGKD PGCIWRPPGA SLHMSSNISC IKMCGKHSPI QRAFLKVVIS  480
CPGNLSVIRY RDLAGCGGHA LVAFIAYIFG VHSWHILFAP ATPFSLLIPV ICTIQFHYES  540
RAFYFCTCNS LMQGNRITTL GSETSGGSVY ILNLVEPVDF DSSSAIGTNV GAALVNLETG  600
MTSWVCRSKS DVLSQQLDPS GNIVLCGLRN GAILTVDVRE KQERVSDRFI RHRIPYSSLG  660
RQGPNSSKQW FEVKGNIYPS RTILMPSSVC SLVSLQSYDQ CFLASSMDGL IKLYDQRMTK  720
RGAVQSYEGH VNSHTRLQLG VDQSERFVMA GGEDCSLRLW SIKSGKLLFE EKISDSVLST  780
VCWKRSERLV KTLNEGNIYD ECLSRQNHSW GTWFGSQEGL FYISWS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-29131157108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015581442.10.0DDB1- and CUL4-associated factor 4 isoform X2
TrEMBLA0A067L3S50.0A0A067L3S5_JATCU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.15e-77myb domain protein 67