PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG023353.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

GeBP

Protein Properties

Length: 413aa MW: 45980.8 Da PI: 4.3218

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG023353.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	120.5	8.4e-38	129	226	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 lfqrlw++eDei lLqG++d+++++g+ + ++d+ fy+++k++++++++k+qlveK+rrLKkK+++ +k++sgk++ f+++hdq +fe+s+kiW CCG023353.1 129 LFQRLWTDEDEIELLQGFLDYTTTKGTvnNHHNDTALFYDQIKSKLQLDFNKNQLVEKLRRLKKKYRNVLNKINSGKDFCFKSPHDQATFEISRKIWS 226 79***********************977888**************************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	5.3E-35	130	226	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence Send to blast
MAAEQDDTVF DQDLEVDDED EDDQSSQSQN DDLEDDLEIE NDDTLPENDD VLSEELLEDD 60 DTSTSAAVPT AIPAVTIASI PAVTTTTTTT AVASDSTPDV LKRQRVPPET TIIPSQDSKK 120 PQFDDTRRLF QRLWTDEDEI ELLQGFLDYT TTKGTVNNHH NDTALFYDQI KSKLQLDFNK 180 NQLVEKLRRL KKKYRNVLNK INSGKDFCFK SPHDQATFEI SRKIWSSTGK IAGFGNEDGH 240 NLDDDDGGNP NPNFNNHNVM MDADVAVKIE DQRSTPRSRK RSRSRPVVGV RTEEKRVLMN 300 DGFVGNETNV NGGGGGNGNL SSVIEETMRS CLSPLFKELL SNMAGAGMGG VGRGVGGLAM 360 NAMPLSFGVG DVMMMDEKWR KQHILELEVY SKRLELVQDQ IRAQLDELRS MGV

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence Send to blast

MAAEQDDTVF DQDLEVDDED EDDQSSQSQN DDLEDDLEIE NDDTLPENDD VLSEELLEDD  60
DTSTSAAVPT AIPAVTIASI PAVTTTTTTT AVASDSTPDV LKRQRVPPET TIIPSQDSKK  120
PQFDDTRRLF QRLWTDEDEI ELLQGFLDYT TTKGTVNNHH NDTALFYDQI KSKLQLDFNK  180
NQLVEKLRRL KKKYRNVLNK INSGKDFCFK SPHDQATFEI SRKIWSSTGK IAGFGNEDGH  240
NLDDDDGGNP NPNFNNHNVM MDADVAVKIE DQRSTPRSRK RSRSRPVVGV RTEEKRVLMN  300
DGFVGNETNV NGGGGGNGNL SSVIEETMRS CLSPLFKELL SNMAGAGMGG VGRGVGGLAM  360
NAMPLSFGVG DVMMMDEKWR KQHILELEVY SKRLELVQDQ IRAQLDELRS MGV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	279	284	KRSRSR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011008272.1	0.0	PREDICTED: mediator-associated protein 1-like
Swissprot	F4K5T4	3e-93	STKLU_ARATH; Probable transcription factor At5g28040
TrEMBL	A0A2K2C3X3	0.0	A0A2K2C3X3_POPTR; Uncharacterized protein
STRING	POPTR_1258s00200.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3255	33	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28040.1	6e-76	DNA-binding storekeeper protein-related transcriptional regulator

Publications ? help Back to Top
García-Cano E,Hak H,Magori S,Lazarowitz SG,Citovsky V The Agrobacterium F-Box Protein Effector VirF Destabilizes the Arabidopsis GLABROUS1 Enhancer/Binding Protein-Like Transcription Factor VFP4, a Transcriptional Activator of Defense Response Genes. Mol. Plant Microbe Interact., 2018. 31(5): p. 576-586 [PMID:29264953]