PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG023433.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 471aa    MW: 51770.3 Da    PI: 9.3336
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG023433.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.31.4e-32189245360
                  -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
         WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                  DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers  d+++ ei+Y+geHnh+k
  CCG023433.1 189 DGYNWRKYGQKQVKGSEYPRSYYKCTYPNCPVKKKVERSF-DGQIAEIVYKGEHNHSK 245
                  9***************************************.***************85 PP
2WRKY104.65.4e-33390447259
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                   Dg++WrKYGqK v+g+++prsYYrCts +C+v+k+ver+++dpk++++tYeg+Hnhe
  CCG023433.1 390 GDGFRWRKYGQKIVRGNPYPRSYYRCTSLKCNVRKHVERASDDPKAFITTYEGKHNHE 447
                  5********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.8E-29178246IPR003657WRKY domain
SuperFamilySSF1182901.83E-25187246IPR003657WRKY domain
SMARTSM007741.8E-36187245IPR003657WRKY domain
PfamPF031063.6E-25189243IPR003657WRKY domain
PROSITE profilePS5081123.617189246IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.1E-34374449IPR003657WRKY domain
SuperFamilySSF1182904.18E-28383449IPR003657WRKY domain
PROSITE profilePS5081134.98384449IPR003657WRKY domain
SMARTSM007743.3E-38389448IPR003657WRKY domain
PfamPF031066.8E-26391447IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MEIKESERVV IAKPVASRPS CSNFRSFSEL LAGAINTSPS PSTDCSETAV AAIRPKTVRF  60
RPTMNRAPGA LVSSQAELSG TTLSNSSNRV ASTDSKTTVI YKPQAKFVSK ATVSLLASMG  120
NFNTNSQQML HSVEARPQCP KENKQNFSSQ LTSNLHQDIT SHAVWLTSQN QEDPKTLSHA  180
SNGDRASYDG YNWRKYGQKQ VKGSEYPRSY YKCTYPNCPV KKKVERSFDG QIAEIVYKGE  240
HNHSKPQPPK RNSSGTQGLG AVSDSNAQDR YTTPLWSNQL IERNEGSEGR EENQIETGLQ  300
VHSIYQGKPP PSCDRAGNGS IIAGAGTSDN SCGLNGECDD GSKGLEGDDD EPRNKRRKAG  360
IQSNKGGISG EGVQEPRVVV QSSTDSEILG DGFRWRKYGQ KIVRGNPYPR SYYRCTSLKC  420
NVRKHVERAS DDPKAFITTY EGKHNHEMPL KSTNIQPLNP DLQAPSSRDK L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-32189449877Probable WRKY transcription factor 4
2lex_A3e-32189449877Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1796081e-159EF179608.1 (Populus tomentosa x P. bolleana) x P. tomentosa clone 01 WRKY transcription factor pseudogene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011048430.10.0PREDICTED: WRKY transcription factor 44-like
RefseqXP_011048432.10.0PREDICTED: WRKY transcription factor 44-like
TrEMBLA0A2K1XCR60.0A0A2K1XCR6_POPTR; Uncharacterized protein
STRINGPOPTR_0006s13550.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67903450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.11e-113WRKY family protein