PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG023673.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 120aa    MW: 13772.2 Da    PI: 11.3702
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG023673.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.15.7e-17489184
                 EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE CS
           B3  1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkl 84
                 f k+l  s + +++rl++p +f+++    ++++   +t   +de+g+ W +++++rk+++    vlt+GW  Fvk+++L++gD v F  
  CCG023673.1  4 FSKIL--SETDTKKRLSVPIRFLRSLpsfKLDS-HAITFEATDEKGKAWPFQCSIRKRGQYpkPVLTRGWVAFVKSKKLQVGDKVRFIK 89
                 67888..88888899*********999986553.56889999***********9988888889**********************9983 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.4472106IPR003340B3 DNA binding domain
PfamPF023622.8E-14491IPR003340B3 DNA binding domain
CDDcd100174.40E-18487No hitNo description
SMARTSM010194.3E-74105IPR003340B3 DNA binding domain
SuperFamilySSF1019364.9E-15496IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-18494IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MAEFSKILSE TDTKKRLSVP IRFLRSLPSF KLDSHAITFE ATDEKGKAWP FQCSIRKRGQ  60
YPKPVLTRGW VAFVKSKKLQ VGDKVRFIKR KNRATATTSY KVRAEKAIKI FGATFGYARI
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2134281e-153AC213428.1 Populus trichocarpa clone POP094-E14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011003895.11e-73PREDICTED: B3 domain-containing transcription factor NGA4-like
TrEMBLB9IDU92e-69B9IDU9_POPTR; Uncharacterized protein
STRINGPOPTR_0015s01840.13e-70(Populus trichocarpa)
STRINGPOPTR_0015s01900.13e-70(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2060778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34390.16e-09auxin response factor 22