PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG023675.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Protein Properties

Length: 115aa MW: 13147.5 Da PI: 11.4184

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG023675.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	47.9	2.4e-15	5	87	2	83
EEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFk 83 k+l + +++rl++p +f+++ g +t +de+g+ W++++++r+++ vl++GW Fvk+++L++gD v F CCG023675.1 5 SKILRKI--DTEKRLSVPIRFLRSLppfklG---SHAVTFEATDEKGEAWTFQCSIRNRGHPkPVLQRGWVAFVKSKKLQVGDKVRFI 87 5666444..45567*******99998532...2457888999******8844444359*******************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	9.756	2	105	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	8.63E-14	3	87	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	6.0E-6	4	104	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.1E-12	4	87	IPR003340	B3 DNA binding domain
CDD	cd10017	1.24E-17	4	86	No hit	No description
Gene3D	G3DSA:2.40.330.10	2.4E-17	4	92	IPR015300	DNA-binding pseudobarrel domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 115 aa Download sequence Send to blast
MTEFSKILRK IDTEKRLSVP IRFLRSLPPF KLGSHAVTFE ATDEKGEAWT FQCSIRNRGH 60 PKPVLQRGWV AFVKSKKLQV GDKVRFIKHM NRATAAISYK VRAEKAIKIF GATFG

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC213428	1e-134	AC213428.1 Populus trichocarpa clone POP094-E14, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011008416.1	3e-80	PREDICTED: B3 domain-containing transcription factor NGA4-like
TrEMBL	U7DXJ1	5e-72	U7DXJ1_POPTR; Uncharacterized protein
STRING	POPTR_0492s00200.1	9e-73	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2060	7	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34390.1	8e-09	auxin response factor 22