PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG023677.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 119aa    MW: 13674.9 Da    PI: 10.3093
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG023677.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.24.1e-157102497
                  E-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
           B3   4 vltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 
                  +lt+    +++rl++p kf+e+     g      +  + +de+g++W ++++ rkk++    vl+kGW  F++ ++L++gD + F+  ++ ++++++ 
  CCG023677.1   7 ILTKT--DTEKRLSVPIKFLESLppfkG-G--HAVYFQAKDERGNVWAFQCSTRKKGRYqkPVLSKGWLAFARKKKLEVGDKIEFYEARDqETEKPFY 99 
                  55443..44557********99998743.3..45679999***********87555554679************************777768888877 PP

                  EEE CS
           B3  95 kvf 97 
                  +v+
  CCG023677.1 100 GVR 102
                  765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508638.9242104IPR003340B3 DNA binding domain
CDDcd100172.28E-18387No hitNo description
SuperFamilySSF1019361.41E-14493IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.0E-84104IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-17593IPR015300DNA-binding pseudobarrel domain
PfamPF023627.5E-136101IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MGSCSKILTK TDTEKRLSVP IKFLESLPPF KGGHAVYFQA KDERGNVWAF QCSTRKKGRY  60
QKPVLSKGWL AFARKKKLEV GDKIEFYEAR DQETEKPFYG VRIEREIKIL GAVIGYTNP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15476RKKGRYQKPVLSKGWLAFARKKK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2134281e-165AC213428.1 Populus trichocarpa clone POP094-E14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011008418.18e-84PREDICTED: B3 domain-containing transcription factor NGA4-like
TrEMBLB9IDU02e-72B9IDU0_POPTR; Uncharacterized protein
STRINGPOPTR_0015s01820.13e-73(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2060778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34390.11e-09auxin response factor 22