PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG023745.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 333aa    MW: 36876.3 Da    PI: 7.3762
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG023745.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.51.1e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+++ +++G+g +W + +++ g++R++k+c++rw++yl
      CCG023745.1 14 KGPWSPEEDAKLKEYLEKHGTGgNWIALPQKAGLRRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding36.98.5e-1269111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g ++ +Ed ++  + +  G++ W+ Ia+ ++ gRt++++k++w++
      CCG023745.1  69 GEFSDDEDRIICSLYASIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                      789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.464962IPR017930Myb domain
SuperFamilySSF466893.76E-2711109IPR009057Homeodomain-like
SMARTSM007171.0E-121364IPR001005SANT/Myb domain
PfamPF002496.7E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-241569IPR009057Homeodomain-like
CDDcd001672.02E-91662No hitNo description
PROSITE profilePS5129421.94863117IPR017930Myb domain
SMARTSM007171.8E-1167115IPR001005SANT/Myb domain
PfamPF002491.5E-1069111IPR001005SANT/Myb domain
CDDcd001677.73E-870113No hitNo description
Gene3DG3DSA:1.10.10.604.6E-2370117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MGRAPCCDKA NMKKGPWSPE EDAKLKEYLE KHGTGGNWIA LPQKAGLRRC GKSCRLRWLN  60
YLRPNIKHGE FSDDEDRIIC SLYASIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMGV  120
INPIAHRKPQ QAALFSSLLQ ATSLPSSPST LLSSPSSSFT CSNNSYYSNL TRSFTDPISF  180
SSSPMSTSSF ATASMLHPQQ TFVGPMQNDQ VKDSLIMFGG EASCSSSDGS CNNQMSHVKE  240
EYEYSGGTNN NNEQMGLQNY LYNGVEDDQK LMVSSGAAAH GVLNGWIEKQ NGLWPGDNPL  300
DYGLEEIKQL ISTSSCNSFS FDENKIGEKV MYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-26111174108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011018758.10.0PREDICTED: transcription factor RAX2-like
TrEMBLA0A2K2A1180.0A0A2K2A118_POPTR; Uncharacterized protein
STRINGPOPTR_0006s12530.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.11e-76myb domain protein 36