PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG023869.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 263aa    MW: 29277.3 Da    PI: 6.1753
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG023869.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY27.27.6e-09133154223
                  --SS-EEEEEEE--TT-SS-EE CS
         WRKY   2 dDgynWrKYGqKevkgsefprs 23 
                  dDg++WrKYGqK++ ++++p s
  CCG023869.1 133 DDGHAWRKYGQKMILNAKYPSS 154
                  8*******************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.2E-8117154IPR003657WRKY domain
PROSITE profilePS508119.328127163IPR003657WRKY domain
SuperFamilySSF1182901.83E-7127154IPR003657WRKY domain
SMARTSM007742.2E-4132168IPR003657WRKY domain
PfamPF031066.4E-6133154IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MESSWPENLP SHRKKVIDEL LRGQEIAKQL KLVMRKSTGD DGSMSAENLV REIMNSFNST  60
LSILNGGGYD DDVSQTTAPT KVCSPLWDGR KSPEDSGESS KSTAAVKVKD RRGCYKRRKS  120
SHSWTNETST LTDDGHAWRK YGQKMILNAK YPSSKHHQMM TNKQNHPFFI TSFQSIKQEY  180
YNKEDTDMPG YDPTIHNNQA LSSDYLLPTD DHDRISTFDH GDVISGVNSS CTTSSHSLDI  240
DSIMAESGGF GDGGDVLGFE FCG
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2240500.0CU224050.1 Populus EST from leave.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011018999.11e-109PREDICTED: probable WRKY transcription factor 70
TrEMBLA0A2I4KK805e-98A0A2I4KK80_POPTR; WRKY family protein
TrEMBLA0A2K2A0865e-98A0A2K2A086_POPTR; Uncharacterized protein
STRINGPOPTR_0006s10950.11e-98(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19953486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.12e-20WRKY DNA-binding protein 70