PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG023971.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

MYB

Protein Properties

Length: 316aa MW: 35660.7 Da PI: 6.7232

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG023971.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.8	6e-09	37	82	3	46
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 +WT+eE +++ +a +++ ++ +W ++a+ ++ g+t +++ ++ CCG023971.1 37 KWTPEENKQFENALALYDKDtpdRWLKVAALIP-GKTVDDVIKQYRE 82 8******************************.*****999986 PP
2	Myb_DNA-binding	44.9	2.6e-14	144	188	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + +++G+g+W+ I+r ++Rt+ q+ s+ qky CCG023971.1 144 PWTEEEHRQFLLGLQKYGKGDWRNISRNYVTTRTPTQVASHAQKY 188 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	9.572	33	87	IPR017884	SANT domain
SMART	SM00717	6.7E-10	34	86	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.5E-4	36	82	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.75E-12	36	91	IPR009057	Homeodomain-like
CDD	cd00167	5.24E-8	37	83	No hit	No description
Pfam	PF00249	1.0E-7	37	82	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	19.67	137	193	IPR017930	Myb domain
SuperFamily	SSF46689	1.51E-17	138	193	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.2E-18	140	192	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	3.1E-12	141	187	IPR009057	Homeodomain-like
SMART	SM00717	1.3E-12	141	191	IPR001005	SANT/Myb domain
Pfam	PF00249	4.9E-12	144	188	IPR001005	SANT/Myb domain
CDD	cd00167	6.79E-11	144	189	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MTPHSLSSLA HFSFPEIPVL QEAVNSNWLF QEGEGTKWTP EENKQFENAL ALYDKDTPDR 60 WLKVAALIPG KTVDDVIKQY RELEEDVCDI EAGLIPIPGY NSDSFTLEWV SDQGYDGLKQ 120 FYSPGGKRGT ATRPSEQERK KGVPWTEEEH RQFLLGLQKY GKGDWRNISR NYVTTRTPTQ 180 VASHAQKYFI RQSTGGKDKR RSSIHDITTV NLPGAKSPSP ENKRLSSPDH STTTMQSQAQ 240 PRTPGTVKGL FDWKQQNEGI ATVCNPANDN LLTTPFCGIS SYESKLQEQN LLGGTLPGYQ 300 FGPYNFIFHM QSMQHQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	7e-17	33	102	6	75	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011019148.1	0.0	PREDICTED: transcription factor DIVARICATA-like
Swissprot	Q8S9H7	1e-107	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	B9HCK2	0.0	B9HCK2_POPTR; Uncharacterized protein
STRING	POPTR_0006s09860.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF466	34	162

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38090.1	1e-117	MYB family protein

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]