PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG024155.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 385aa    MW: 42734.8 Da    PI: 9.155
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG024155.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.61.1e-16124169147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v+q+G+ +W++Ia+ +  gR++k+c++rw++ 
      CCG024155.1 124 RGHWRPAEDAKLKELVAQYGPQNWNLIAENLE-GRSGKSCRLRWFNQ 169
                      899*****************************.***********996 PP
2Myb_DNA-binding58.61.4e-18176219146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++T+eE+e+l+ a++++G++ W++Iar ++ gRt++ +k++w+ 
      CCG024155.1 176 RRAFTEEEEERLLAAHRLYGNK-WALIARLFP-GRTDNAVKNHWHV 219
                      678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.784119170IPR017930Myb domain
SMARTSM007171.4E-14123172IPR001005SANT/Myb domain
PfamPF002495.1E-16124169IPR001005SANT/Myb domain
SuperFamilySSF466892.06E-28124217IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-26125177IPR009057Homeodomain-like
CDDcd001671.12E-13127168No hitNo description
PROSITE profilePS5129427.48171225IPR017930Myb domain
SMARTSM007175.2E-16175223IPR001005SANT/Myb domain
PfamPF002491.3E-15176218IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-21178223IPR009057Homeodomain-like
CDDcd001675.46E-8187218No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MSLQHLMSDK YVFNGYQEMN FLPPPPPPAS HLSLSHASGV MGQPGETGTS NPQMGFQILS  60
HPMGQDRKPR SIQQLESRGA KRPGDTSDVD FGVQKKSLSL NLGKEEELKT SALGRNGHTK  120
LCARGHWRPA EDAKLKELVA QYGPQNWNLI AENLEGRSGK SCRLRWFNQL DPGINRRAFT  180
EEEEERLLAA HRLYGNKWAL IARLFPGRTD NAVKNHWHVI MARQHREKSS VYRRRKPTSS  240
SQILPKGSLN VTMQNNACSE STTINSTIEE SGSTCTDLSL TPSSTKVPTR LFTRFSPQGS  300
QRGLSAEKEA AMGNVDFDEF YGSNNGFYQN GPMMVVSRVD QSGQSDSNSE ESATGSVVTN  360
RANLCENRNE KINMLFIDFL GVGAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-331242247107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for sugar partitioning from leaves to anthers during male reproductive development. Required for the production of functional pollen grains. Binds to the promoter of the anther-specific sugar transporter MST8 and regulates its expression. Regulates the expression of genes involved in sugar partitioning in flower, such as the sugar transporter SUT3, the invertase INV4, the UDP-glucose pyrophosphorylase UGP2 and the starch synthase WAXY. {ECO:0000269|PubMed:20305120}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding. {ECO:0000269|PubMed:20305120}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1482091e-137EF148209.1 Populus trichocarpa clone WS0128_M01 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011008593.10.0PREDICTED: transcription factor TT2-like
SwissprotQ5NBM81e-75CSA_ORYSJ; Transcription factor CSA
TrEMBLA0A2K1WPB90.0A0A2K1WPB9_POPTR; Uncharacterized protein
STRINGPOPTR_0019s05740.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.11e-67myb domain protein 105
Publications ? help Back to Top
  1. Leonard LM,Follette VM
    Sexual functioning in women reporting a history of child sexual abuse: review of the empirical literature and clinical implications.
    Annu Rev Sex Res, 2002. 13: p. 346-88
    [PMID:12836736]
  2. Wang L,Li X,Chen Z
    Sulfated modification of the polysaccharides obtained from defatted rice bran and their antitumor activities.
    Int. J. Biol. Macromol., 2009. 44(2): p. 211-4
    [PMID:19135473]
  3. Wang L,Huang H,Wei Y,Li X,Chen Z
    Characterization and anti-tumor activities of sulfated polysaccharide SRBPS2a obtained from defatted rice bran.
    Int. J. Biol. Macromol., 2009. 45(4): p. 427-31
    [PMID:19549538]
  4. Zhang H, et al.
    Carbon starved anther encodes a MYB domain protein that regulates sugar partitioning required for rice pollen development.
    Plant Cell, 2010. 22(3): p. 672-89
    [PMID:20305120]
  5. Zhang H, et al.
    Mutation in CSA creates a new photoperiod-sensitive genic male sterile line applicable for hybrid rice seed production.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(1): p. 76-81
    [PMID:23256151]
  6. Zhu X, et al.
    Brassinosteroids promote development of rice pollen grains and seeds by triggering expression of Carbon Starved Anther, a MYB domain protein.
    Plant J., 2015. 82(4): p. 570-81
    [PMID:25754973]
  7. Li X, et al.
    Metabolic and transcriptomic signatures of rice floral organs reveal sugar starvation as a factor in reproductive failure under heat and drought stress.
    Plant Cell Environ., 2015. 38(10): p. 2171-92
    [PMID:25828772]
  8. Shaar-Moshe L,Hübner S,Peleg Z
    Identification of conserved drought-adaptive genes using a cross-species meta-analysis approach.
    BMC Plant Biol., 2015. 15: p. 111
    [PMID:25935420]