PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG024160.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

LBD

Protein Properties

Length: 217aa MW: 24095.2 Da PI: 7.0731

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG024160.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	121.5	4.6e-38	5	104	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 aCaaC+++rr+C +dC+lap fp e++k+f+++hklFG++n+ + lk++ +e++++ ++s+vyeA+ar+rdPv+G++g+i++l q+++ +k+el+ ++ CCG024160.1 5 ACAACRHQRRRCRPDCPLAPFFPPEKAKDFEAAHKLFGVHNIANNLKKIIPEQKPESITSMVYEANARVRDPVSGCTGIISRLLQNINAVKVELEFVQ 102 7**********************************************************************************************999 PP DUF260 99 ee 100 ++ CCG024160.1 103 AQ 104 87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.783	4	105	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.9E-37	5	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MKPPACAACR HQRRRCRPDC PLAPFFPPEK AKDFEAAHKL FGVHNIANNL KKIIPEQKPE 60 SITSMVYEAN ARVRDPVSGC TGIISRLLQN INAVKVELEF VQAQVACFHT LQQQLGDQNV 120 VDNVGFVDFL QENSSANIVQ SLNQDCNFLY ENLQNPQQLQ ESSFAQETKL FDGVHQGISL 180 SIGQPAVKPE RRPSSSPSSS KVHGKQPLQD VSDIDGF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-25	6	105	12	111	LOB family transfactor Ramosa2.1
5ly0_B	2e-25	6	105	12	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011008586.1	1e-153	PREDICTED: protein LATERAL ORGAN BOUNDARIES-like
TrEMBL	A0A3N7HWH5	1e-149	A0A3N7HWH5_POPTR; Uncharacterized protein
STRING	POPTR_0018s05240.1	1e-116	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF28264	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.4	5e-22	LBD family protein