PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG024223.2
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HD-ZIP
Protein Properties Length: 833aa    MW: 91401.2 Da    PI: 6.0572
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG024223.2genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.52.3e-18563357
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                 k  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  CCG024223.2  5 KYVRYTPEQVEALERVYTECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 63
                 6789*****************************************************97 PP
2START172.82.2e-541543612204
                  HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEX CS
        START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvae 97 
                  +aee+++e+++ka+ ++  Wv++  +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++  ++l vi +g  g+++l++++
  CCG024223.2 154 IAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPT-KVAEILKDRPSWFRDCRCLDILSVIPTGsgGTIELIYMQ 250
                  68999*****************************************************.8888888888***************************** PP

                  XTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHH CS
        START  98 lqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglae 191
                  ++a+++l++ Rdf+++Ry+ +l++g++vi+++S++s +  p+    ss++Rae+lpSg+li+p+++ +s +++v+hvdl+ ++++++lr+l++s+ + 
  CCG024223.2 251 TYAPTTLAAaRDFWTLRYTTTLEDGSLVICERSLTSSTGGPTgppPSSFIRAEMLPSGYLIRPCEGSGSIIHIVDHVDLDVWSVPEVLRPLYESSKIL 348
                  ************************************99999888899*************************************************** PP

                  HHHHHHHHTXXXX CS
        START 192 gaktwvatlqrqc 204
                  ++k+++a+l++ +
  CCG024223.2 349 AQKMTMAALRHIR 361
                  *********9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.677164IPR001356Homeobox domain
SMARTSM003897.1E-15268IPR001356Homeobox domain
CDDcd000863.96E-16565No hitNo description
SuperFamilySSF466892.91E-16567IPR009057Homeodomain-like
PfamPF000465.5E-16563IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.7E-18763IPR009057Homeodomain-like
CDDcd146861.75E-65796No hitNo description
PROSITE profilePS5084825.241144372IPR002913START domain
CDDcd088754.98E-72148364No hitNo description
Gene3DG3DSA:3.30.530.207.8E-23152358IPR023393START-like domain
SMARTSM002349.6E-51153363IPR002913START domain
SuperFamilySSF559611.51E-38154365No hitNo description
PfamPF018529.8E-52154361IPR002913START domain
SuperFamilySSF559619.06E-6400486No hitNo description
SuperFamilySSF559619.06E-6514588No hitNo description
PfamPF086701.9E-51688832IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 833 aa     Download sequence    Send to blast
MDSSKYVRYT PEQVEALERV YTECPKPSSL RRQQLIRECP ILSNIEPKQI KVWFQNRRCR  60
EKQRKEASRL QTVNRKLTAM NKLLMEENDR LQKQVSHLVY ENGFMRQQIQ TASATTTDNS  120
CESVVMSGQH QQQQNPTPQQ PQRDANNPAG LLAIAEETLA EFLSKATGTA VDWVQMIGMK  180
PGPDSIGIVA VSRNCSGVAA RACGLVSLEP TKVAEILKDR PSWFRDCRCL DILSVIPTGS  240
GGTIELIYMQ TYAPTTLAAA RDFWTLRYTT TLEDGSLVIC ERSLTSSTGG PTGPPPSSFI  300
RAEMLPSGYL IRPCEGSGSI IHIVDHVDLD VWSVPEVLRP LYESSKILAQ KMTMAALRHI  360
RQIAQETSGE IQYGGGRQPA VLRTFSQRLC RGFNDAVNGF TDDGWSLLGS DGGDDVTIVI  420
NSSPNKFLGS QYNASMFPTF GGGVLCAKAS MLLQNVPPAL LVRFLREHRS EWADYGVDAY  480
SAACLKASPY AVPCARAGGF PSSQVILPLA HTMEHEEFLE VVRLEGHAFS PEDVALARDM  540
YLLQLCSGVD ENAVGACAQL VFAPIDESFA DDAPLLSSGF RVIPLDPKTD APATTRTLDL  600
ASTLEVGPGG TRPASEADTN SYNLRSVLTI AFQFSFENHM RDNVAAMARQ YVRGVVGSVQ  660
RVAMAIAPSR LSSNVGPKTL PGSPEALTLA QWICRSYRIH TGGELFRVDS QAGDALLKQL  720
WHHSDAIMCC SLKTNASPVF TFANQAGLDM LETTLVALQD IMLDKILDEA GRKILCSEFS  780
KITQQGFAYL PAGICVSSMG RPVSYEQAVA WKVLNEDDSN HCLAFMFMNW SFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY9196190.0AY919619.1 Populus trichocarpa class III HD-Zip protein 4 (HB4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011038887.10.0PREDICTED: homeobox-leucine zipper protein ATHB-14-like isoform X2
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A2I4KKW50.0A0A2I4KKW5_POPTR; HD-ZIP family protein
STRINGPOPTR_0001s38120.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51763353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]