PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG024274.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 497aa    MW: 55835.4 Da    PI: 6.7111
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG024274.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00043224123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C+ C+ksF +  +L  H+r H
  CCG024274.1  2 HVCKLCNKSFLTGNMLGGHMRIH 24
                 79*******************99 PP
2zf-C2H211.60.000877495223
                 EETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                 kC  Cgk F +  +L+ H+r H
  CCG024274.1 74 KCRFCGKEFGSEKSLHGHMRHH 95
                 7*******************99 PP
3zf-C2H211.80.00076105125323
                  ETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                  C+ Cg+ F +  +L +H r+H
  CCG024274.1 105 CEECGRGFLSLKSLSNHKRLH 125
                  *******************99 PP
4zf-C2H211.40.001385407123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C +C++ F+++ +L  H+  H
  CCG024274.1 385 FTCRICNRKFNTHQSLGGHQTFH 407
                  89**************9999877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.97229IPR007087Zinc finger, C2H2
PfamPF139123.0E-5224IPR007087Zinc finger, C2H2
SuperFamilySSF576677.1E-6229No hitNo description
SMARTSM003550.062224IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280424IPR007087Zinc finger, C2H2
SuperFamilySSF576677.45E-873125No hitNo description
SMARTSM003550.0217395IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.90773100IPR007087Zinc finger, C2H2
PfamPF139122.8E-47497IPR007087Zinc finger, C2H2
PROSITE patternPS0002807595IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.741103125IPR007087Zinc finger, C2H2
SMARTSM003550.29103125IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280105125IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.0E-4105126IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139120.0048105127IPR007087Zinc finger, C2H2
SuperFamilySSF576671.88E-7385407No hitNo description
PfamPF139123.5E-4385409IPR007087Zinc finger, C2H2
SMARTSM003550.33385407IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.764385412IPR007087Zinc finger, C2H2
PROSITE patternPS000280387407IPR007087Zinc finger, C2H2
SuperFamilySSF576671.88E-7459486No hitNo description
PROSITE profilePS501579.016464486IPR007087Zinc finger, C2H2
PfamPF139123.4E-8464486IPR007087Zinc finger, C2H2
SMARTSM003551.6464486IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280466486IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MHVCKLCNKS FLTGNMLGGH MRIHGTRKSI EGNVKFESSN VGPDSCGLRE QPKKSCKSSD  60
FNHDDSVSMQ ETVKCRFCGK EFGSEKSLHG HMRHHPAKER NGVYCEECGR GFLSLKSLSN  120
HKRLHRENFR ISSEPRASSR PNLVSMALSA TEDVNLVRRK RSSRMRYKIT PNSSFSSLNE  180
SFSGFDIDQE VEEAALTLIM MSRSGCVGFD SLCRNKRIER DEDCHVFYGN ELVKPKKPRE  240
DNLDSCDLDS MTSIYGCSGE GDTETGRDEE NQVRSKVPRE SIFKYIESKS PQLDDESGVE  300
FCGIDKEKGD HDEMLTTCTE AESSQDLMSE VGLDCAGLGF EKSIPSNQAR FDACNSEMGK  360
ESRYQMVVTT SSSDIMQGPS KKGDFTCRIC NRKFNTHQSL GGHQTFHRKS PIEVKVDSCE  420
KDIQTNFSAE TEATDKLECI QELAKQESDD VIVKHCESKE GKEHKCSICF KVFLSGQALG  480
GHKRAHFLRA REEQDTA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011008618.10.0PREDICTED: uncharacterized protein LOC105113944
TrEMBLA0A2I4KKW90.0A0A2I4KKW9_POPTR; C2H2 family protein
STRINGPOPTR_0004s11730.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133592027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67450.16e-17zinc-finger protein 1