PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG024275.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 466aa    MW: 52189.7 Da    PI: 4.0993
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG024275.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.56.1e-08256304247
                      SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 
                      ++WT eE++++ ++v   +       W+  + t++  Rt k+++++++++
      CCG024275.1 256 NKWTVEEEQIFREVVLSNPVSlgknFWDNLSVTFP-SRTKKDLVNYYFNV 304
                      58*************8644444444**********.***********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-5252314IPR009057Homeodomain-like
SuperFamilySSF466892.73E-5254305IPR009057Homeodomain-like
SMARTSM007170.0042254307IPR001005SANT/Myb domain
PROSITE profilePS500906.191256305IPR017877Myb-like domain
CDDcd001671.58E-6257305No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MIQKRAFADD NSYEVACKHP RKMEHIDQFP PIFPLDNAHQ KHVVSGDDTY RECQDVGRSA  60
SDLVTEYSNG TSQEFETGDN GCFPQFLWIS NGILEADNSS FFPEYFDDGH QLRPFLEPDE  120
ACSSLVYPFR KSVSIGPEHQ ANVPEWGSQG SSTSLNQLDK SNLQVAHAQS SSPGVIIDGC  180
YEENLMGTCV LPMHELEVPA KYCYEATRGD CGSPDAGSIR CIKQHVSEAR LKLRENLGEE  240
IFEGLGFCDM GEMVANKWTV EEEQIFREVV LSNPVSLGKN FWDNLSVTFP SRTKKDLVNY  300
YFNVFMLRKR AEQNRFDPLN IDSDDDEWQG IEGETIENDE DSAVESLAGQ DSSAYCQEDH  360
AENCNEYVED EDEVVATQDG VDNVVHKVAT DAEYEGDVDD FSGAQVGIYH GDRAGYVEHK  420
HFIQISGNNA NDFDVQDDSC TSYEHHQDSI DCCGPFDIGA DGRHSS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011008614.10.0PREDICTED: uncharacterized protein LOC105113942
RefseqXP_011008615.10.0PREDICTED: uncharacterized protein LOC105113942
TrEMBLA0A2K2ATC80.0A0A2K2ATC8_POPTR; Uncharacterized protein
TrEMBLA0A385JHY30.0A0A385JHY3_POPTO; Uncharacterized protein
STRINGPOPTR_0004s11750.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2153810