PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG024440.1
Common NameCBF2
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 223aa    MW: 25273.3 Da    PI: 6.046
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG024440.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.2e-174999155
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 + ++GVr +   ++Wv+e r+p   +k+ r++lg++ t+e+Aa+a++ a+++l+g
  CCG024440.1 49 PVFRGVRKRN-GNKWVCEMREP---NKKSRIWLGTYPTPEMAARAHDVAALALRG 99
                 579****887.9******9998...347*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.2E-124999IPR001471AP2/ERF domain
SMARTSM003804.1E-2750113IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-2050109IPR016177DNA-binding domain
PROSITE profilePS5103221.35150107IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-2950109IPR001471AP2/ERF domain
PRINTSPR003674.1E-75162IPR001471AP2/ERF domain
CDDcd000181.20E-2751109No hitNo description
PRINTSPR003674.1E-77389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MPIDRQEASS FSDSSTSRRV VHSDEEVLLA TSFPKKRAGR RIFRETRHPV FRGVRKRNGN  60
KWVCEMREPN KKSRIWLGTY PTPEMAARAH DVAALALRGK SACLNFADSA WRLPVPVSKD  120
SKDITRAANE AAELFRPQEF GGHPAKQQDS NAVLEDYSSE VCSDDCKTFQ ENDFFFEEAV  180
LDMPGLLVDM AEGLLLSPPR YVRNDCNDLD HMENGSDLSL WSY
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00002PBMTransfer from 475045Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC3457520.0KC345752.1 Populus euphratica C-repeat binding factor 4c mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011014145.11e-166PREDICTED: dehydration-responsive element-binding protein 1E-like
RefseqXP_011029176.11e-166PREDICTED: dehydration-responsive element-binding protein 1E-like
SwissprotQ9FJ935e-62DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLA0A0N6ZD431e-164A0A0N6ZD43_POPEU; C-repeat/dehydration-responsive element-binding factor 2
STRINGPOPTR_0001s08710.11e-136(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.16e-53C-repeat-binding factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  3. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  4. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]