PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG024695.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NAC

Protein Properties

Length: 252aa MW: 27994 Da PI: 4.9655

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG024695.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	38.9	2.7e-12	3	49	54	101
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvg 101 +e+e+ fF++r++ky++g+r+ ra++ gyWkatgkdk+v+ +g+ vg CCG024695.1 3 GEEETCFFTPRNRKYRNGSRPDRAAEGGYWKATGKDKTVKY-RGTPVG 49 46799**********************************99.555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	14.123	1	97	IPR003441	NAC domain
SuperFamily	SSF101941	6.28E-16	2	72	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
RYGEEETCFF TPRNRKYRNG SRPDRAAEGG YWKATGKDKT VKYRGTPVGN WISILERLYR 60 LADWVLCKIY KKTKKPKDVR NRQRDEENST LTAMDNVDYV NNHDEDRTVL PVMDAGYVGE 120 MDNVGADAVF TDDYSQQEIA SSEFPADFNL HAASYSGMFP SLAETCGDPA SVFSNSDNLS 180 TLYDLLNPAN FHWNIDDPLF DLHTSVPINI PGNPVPAPGN LANPASPCNL PAANHVPSSR 240 NLPSAYLAPP GN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-16	2	72	68	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-16	2	72	68	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-16	2	72	68	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-16	2	72	68	165	NO APICAL MERISTEM PROTEIN
3swm_A	3e-16	2	72	71	168	NAC domain-containing protein 19
3swm_B	3e-16	2	72	71	168	NAC domain-containing protein 19
3swm_C	3e-16	2	72	71	168	NAC domain-containing protein 19
3swm_D	3e-16	2	72	71	168	NAC domain-containing protein 19
3swp_A	3e-16	2	72	71	168	NAC domain-containing protein 19
3swp_B	3e-16	2	72	71	168	NAC domain-containing protein 19
3swp_C	3e-16	2	72	71	168	NAC domain-containing protein 19
3swp_D	3e-16	2	72	71	168	NAC domain-containing protein 19
4dul_A	2e-16	2	72	68	165	NAC domain-containing protein 19
4dul_B	2e-16	2	72	68	165	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002304383.2	1e-146	NAC domain-containing protein 2
TrEMBL	B9GZX0	1e-144	B9GZX0_POPTR; Uncharacterized protein
STRING	POPTR_0003s10250.1	1e-145	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF28277	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27410.2	2e-18	NAC family protein