PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG024718.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

GRF

Protein Properties

Length: 346aa MW: 38314.6 Da PI: 8.6427

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG024718.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	72.4	5.1e-23	79	123	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++ +++k+CErH++r+r+rsrk++e+ CCG024718.1 79 DSEPGRCRRTDGKKWRCSKDAHPDSKYCERHMNRSRNRSRKPVES 123 689***************************************986 PP
2	QLQ	50.9	4.8e-18	19	53	3	37
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 FT +Q+++L++Q+ ++K+L a++PvPp+Ll++i+k CCG024718.1 19 FTVSQWHELEHQVRIFKCLDAGLPVPPNLLVPICK 53 9********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	4.8E-8	17	53	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	19.684	18	53	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	1.1E-12	19	52	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	24.45	79	123	IPR014977	WRC domain
Pfam	PF08879	1.2E-19	81	122	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MSNSSVTVAA VGSRSPPGFT VSQWHELEHQ VRIFKCLDAG LPVPPNLLVP ICKSFQLLSP 60 GFLHPSNLSY CSYFGKKIDS EPGRCRRTDG KKWRCSKDAH PDSKYCERHM NRSRNRSRKP 120 VESQTTSQSL STVASEIATG SSSSGSRGYP TNPGTLGLGS NMSRWQMESM PYGVNSKDYR 180 SLHGPKLEAD EKTFLPEALG NTRSFGMNST VDSTWHLTSQ VPANPVPESR NGAQLQNYPQ 240 VQTLQDFEPL TDDAASSKQQ QQHYLFGREF SSSGSMRREN QPLQPLFEEW PKCRDMDSYL 300 TDQRSNNNSS AVQLSMAIPM APNPAARSYH SPNGETGLSG TYFSAT

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MSNSSVTVAA VGSRSPPGFT VSQWHELEHQ VRIFKCLDAG LPVPPNLLVP ICKSFQLLSP  60
GFLHPSNLSY CSYFGKKIDS EPGRCRRTDG KKWRCSKDAH PDSKYCERHM NRSRNRSRKP  120
VESQTTSQSL STVASEIATG SSSSGSRGYP TNPGTLGLGS NMSRWQMESM PYGVNSKDYR  180
SLHGPKLEAD EKTFLPEALG NTRSFGMNST VDSTWHLTSQ VPANPVPESR NGAQLQNYPQ  240
VQTLQDFEPL TDDAASSKQQ QQHYLFGREF SSSGSMRREN QPLQPLFEEW PKCRDMDSYL  300
TDQRSNNNSS AVQLSMAIPM APNPAARSYH SPNGETGLSG TYFSAT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011028066.1	0.0	PREDICTED: growth-regulating factor 4-like isoform X1
Refseq	XP_011028067.1	0.0	PREDICTED: growth-regulating factor 4-like isoform X1
TrEMBL	A0A2K2B4N6	0.0	A0A2K2B4N6_POPTR; Uncharacterized protein
STRING	POPTR_0003s10000.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4781	29	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	2e-36	growth-regulating factor 2