PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG024729.2

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

BBR-BPC

Protein Properties

Length: 733aa MW: 79458 Da PI: 10.1708

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG024729.2	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	84.7	3.3e-26	636	687	250	301
GAGA_bind 250 rrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 r+g R+a rKmS+ga+ kl+ kL+aeGydls+ +DLkdhWA+HGt+kfvti+ CCG024729.2 636 RPGVRMAKRKMSNGAYVKLILKLSAEGYDLSHHLDLKDHWARHGTDKFVTIK 687 889************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04172	9.8E-37	218	433	IPR007300	CidB/LrgB family
SMART	SM01226	6.8E-10	532	687	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	4.2E-20	636	687	IPR010409	GAGA-binding transcriptional activator

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009658	Biological Process	chloroplast organization
GO:0009853	Biological Process	photorespiration
GO:0097339	Biological Process	glycolate transmembrane transport
GO:1901975	Biological Process	glycerate transmembrane transport
GO:0009706	Cellular Component	chloroplast inner membrane
GO:0043879	Molecular Function	glycolate transmembrane transporter activity
GO:1901974	Molecular Function	glycerate transmembrane transporter activity

Sequence ? help Back to Top
Protein Sequence Length: 733 aa Download sequence Send to blast
MGPQETCSSR RISKKSMSSE GSTSSTSSSS ISQQVIGILH LLVSLGIILA MDKLLKKAFV 60 AAAIKFPSAL FGMFCIFSVL VILDITIPAA ATSLMNFFEP ALLFIQRWLP LFYVPSLVVL 120 PLSIKDIPAA SGVKICFITA GGWLASLCVA GFTAIAVRKM VKTEMTDAEP MAKPSPFSPL 180 EMWAWSGVFL VSFVVALLYR TALGTAARTC LPFLLASTVL GYMVGSGLPS GVKKVFHPII 240 CCALSADLAA LAFGFLSQSG LDPVLGYYLT KVSSNPGAGD VLMGFLGSVI LSFAFSMFKQ 300 RKLVKRHAAE IFTSVIVSTL FSLYSTALVG RLVELEPTLT VSIIPRCITV ALALSIVSFF 360 EGANSSLTAA VVVVTGLIGA NFVQAVLDKL NFLDPIARGI ATASSAHGLG TAALSAKEPE 420 ALPFCAIAYA LTGGQLAEKH KLNVKGKLSI LHLERVENPV DTKEATVAQK ENLHHLTLNW 480 RKYGESESQE HAEQALESLE PHPNPKHGYE DGDILLKPCD TRSKHSGISF TFSWFYPGWF 540 FSAPKTNSGP DRTQKDPQPG VPVASIRSIS PAELAKRNNS RTKPRKARKQ KSADKNSNQI 600 PPKVLGPKQP EKKSSKKTNG QIRPESKPLS SHDFIRPGVR MAKRKMSNGA YVKLILKLSA 660 EGYDLSHHLD LKDHWARHGT DKFVTIKKRS GMLEAKLPAY LIPNLPRMAM EVDVISLPND 720 VIFVLFPTTR NFT

Sequence ? help Back to Top

Protein Sequence Length: 733 aa Download sequence Send to blast

MGPQETCSSR RISKKSMSSE GSTSSTSSSS ISQQVIGILH LLVSLGIILA MDKLLKKAFV  60
AAAIKFPSAL FGMFCIFSVL VILDITIPAA ATSLMNFFEP ALLFIQRWLP LFYVPSLVVL  120
PLSIKDIPAA SGVKICFITA GGWLASLCVA GFTAIAVRKM VKTEMTDAEP MAKPSPFSPL  180
EMWAWSGVFL VSFVVALLYR TALGTAARTC LPFLLASTVL GYMVGSGLPS GVKKVFHPII  240
CCALSADLAA LAFGFLSQSG LDPVLGYYLT KVSSNPGAGD VLMGFLGSVI LSFAFSMFKQ  300
RKLVKRHAAE IFTSVIVSTL FSLYSTALVG RLVELEPTLT VSIIPRCITV ALALSIVSFF  360
EGANSSLTAA VVVVTGLIGA NFVQAVLDKL NFLDPIARGI ATASSAHGLG TAALSAKEPE  420
ALPFCAIAYA LTGGQLAEKH KLNVKGKLSI LHLERVENPV DTKEATVAQK ENLHHLTLNW  480
RKYGESESQE HAEQALESLE PHPNPKHGYE DGDILLKPCD TRSKHSGISF TFSWFYPGWF  540
FSAPKTNSGP DRTQKDPQPG VPVASIRSIS PAELAKRNNS RTKPRKARKQ KSADKNSNQI  600
PPKVLGPKQP EKKSSKKTNG QIRPESKPLS SHDFIRPGVR MAKRKMSNGA YVKLILKLSA  660
EGYDLSHHLD LKDHWARHGT DKFVTIKKRS GMLEAKLPAY LIPNLPRMAM EVDVISLPND  720
VIFVLFPTTR NFT

Functional Description ? help Back to Top
Source	Description
UniProt	Glycolate/glycerate transporter required for photorespiration. {ECO:0000269\|PubMed:21916894, ECO:0000269\|PubMed:22180599, ECO:0000269\|PubMed:23382251}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU224247	0.0	CU224247.1 Populus EST from leave.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011028088.1	0.0	PREDICTED: plastidal glycolate/glycerate translocator 1, chloroplastic
Swissprot	Q9FVQ4	0.0	PLGG1_ARATH; Plastidal glycolate/glycerate translocator 1, chloroplastic
TrEMBL	A0A2K2B4L9	0.0	A0A2K2B4L9_POPTR; Uncharacterized protein
STRING	XP_002519004.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6767	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35550.4	6e-23	basic pentacysteine 7

Publications ? help Back to Top
Ferro M, et al. Proteomics of the chloroplast envelope membranes from Arabidopsis thaliana. Mol. Cell Proteomics, 2003. 2(5): p. 325-45 [PMID:12766230] Carvalho MF,Turgeon R,Lazarowitz SG The geminivirus nuclear shuttle protein NSP inhibits the activity of AtNSI, a vascular-expressed Arabidopsis acetyltransferase regulated with the sink-to-source transition. Plant Physiol., 2006. 140(4): p. 1317-30 [PMID:16461385] Tyra HM,Linka M,Weber AP,Bhattacharya D Host origin of plastid solute transporters in the first photosynthetic eukaryotes. Genome Biol., 2007. 8(10): p. R212 [PMID:17919328] Yang Y, et al. A chloroplast envelope membrane protein containing a putative LrgB domain related to the control of bacterial death and lysis is required for chloroplast development in Arabidopsis thaliana. New Phytol., 2012. 193(1): p. 81-95 [PMID:21916894] Yamaguchi M, et al. Loss of the plastid envelope protein AtLrgB causes spontaneous chlorotic cell death in Arabidopsis thaliana. Plant Cell Physiol., 2012. 53(1): p. 125-34 [PMID:22180599] Pick TR, et al. PLGG1, a plastidic glycolate glycerate transporter, is required for photorespiration and defines a unique class of metabolite transporters. Proc. Natl. Acad. Sci. U.S.A., 2013. 110(8): p. 3185-90 [PMID:23382251] Nakahara J, et al. Bending of protonema cells in a plastid glycolate/glycerate transporter knockout line of Physcomitrella patens. PLoS ONE, 2015. 10(3): p. e0118804 [PMID:25793376] Maurino VG,Engqvist MK 2-Hydroxy Acids in Plant Metabolism. Arabidopsis Book, 2015. 13: p. e0182 [PMID:26380567] Rolland V,Badger MR,Price GD Redirecting the Cyanobacterial Bicarbonate Transporters BicA and SbtA to the Chloroplast Envelope: Soluble and Membrane Cargos Need Different Chloroplast Targeting Signals in Plants. Front Plant Sci, 2016. 7: p. 185 [PMID:26973659] Walker BJ,South PF,Ort DR Physiological evidence for plasticity in glycolate/glycerate transport during photorespiration. Photosyn. Res., 2016. 129(1): p. 93-103 [PMID:27251551] South PF, et al. Bile Acid Sodium Symporter BASS6 Can Transport Glycolate and Is Involved in Photorespiratory Metabolism in Arabidopsis thaliana. Plant Cell, 2017. 29(4): p. 808-823 [PMID:28351992] Dong H,Bai L,Chang J,Song CP Chloroplast protein PLGG1 is involved in abscisic acid-regulated lateral root development and stomatal movement in Arabidopsis. Biochem. Biophys. Res. Commun., 2018. 495(1): p. 280-285 [PMID:29097201]