PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG024756.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family G2-like
Protein Properties Length: 376aa    MW: 42531.3 Da    PI: 8.3762
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG024756.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1023.8e-32199252255
      G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  CCG024756.1 199 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 252
                  9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.97E-15196252IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-28197252IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-23199252IPR006447Myb domain, plants
PfamPF002492.5E-7200251IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0048481Biological Processplant ovule development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MELFPAQPDL SLQISPPNSK PTSTWRRTEE EMDLGFWTRA LDSRNSISSM AKPDTCFELS  60
LSNPKVSEPN SNHFHNILQN SKNCNGNNLF HSFQQNQYTH HHHQQNHLHN HHPVLFQQQQ  120
QQGLSQELDF LRPIRGIPVY QNPPPFPFSH QTFDNTCSQA SSLAANNSSA TSLSPYQSQG  180
SMRSRFMSRF PAKRSMRAPR MRWTTTLHAR FVHAVELLGG HERATPKSVL ELMDVKDLTL  240
AHVKSHLQMY RTVKTTDRAA APSAQSDVFD NGSSGDTSED LIFDTENPRR SEMSMQQGRP  300
NAHQDKDYQA LWSNSSREAW LHGKLKDSGG NLPPLEQKGM DPKCLSYEKI SDVSSSTVSG  360
TSPMKPNLEF TLGRPH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A9e-17200254458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B9e-17200254458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A9e-17200254458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C9e-17200254458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D9e-17200254458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F9e-17200254458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H9e-17200254458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J9e-17200254458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00174DAPTransfer from AT1G32240Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011028117.10.0PREDICTED: probable transcription factor KAN2 isoform X3
SwissprotQ9C6166e-98KAN2_ARATH; Probable transcription factor KAN2
TrEMBLB9GZJ10.0B9GZJ1_POPTR; Uncharacterized protein
STRINGPOPTR_0003s09490.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59683452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.15e-74G2-like family protein
Publications ? help Back to Top
  1. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]