PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG024803.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 239aa    MW: 26362.1 Da    PI: 6.3334
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG024803.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.000127395123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C+ C + F++   L  H+++H
  CCG024803.1 73 YTCTFCRREFRSAQALGGHMNVH 95
                 9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.55E-670100No hitNo description
SMARTSM003550.00667395IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.15773100IPR007087Zinc finger, C2H2
PROSITE patternPS0002807595IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MAAEIGLLSL TQPQNLPQSH QNQYQHQPNP SETPSVWMWN PKQTQEDDDS WEVRAFAEDT  60
GNINGTTWPP RSYTCTFCRR EFRSAQALGG HMNVHRRDRA RLHQTQPGST NPHSLTSSSS  120
SSTLIIPTQE FPPNSGLCLL YQLPNPNGVF TPTNMTACSI DSSSTLISIT PYPHNNLVGP  180
SLNFPVAPPE ISTSHCCSNI KAEPSASTDH SNGIKNNNCK ELANEELDLE LRLGHRSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A3e-136895229superman protein
2l1o_A3e-136895229Transcriptional regulator SUPERMAN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM4533380.0HM453338.1 Populus trichocarpa palmate-like pentafoliata 1 transcription factor (PALM1) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011028187.11e-177PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBLB9N2N51e-164B9N2N5_POPTR; Uncharacterized protein
STRINGPOPTR_0003s09000.11e-165(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35253155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.13e-42C2H2 family protein