PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG024810.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family LSD
Protein Properties Length: 153aa    MW: 15815.5 Da    PI: 7.7276
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG024810.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD142.21.4e-133660125
      zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                 C+gCr+lL YP GA+sV+Ca+C++V
  CCG024810.1 36 CSGCRNLLLYPVGATSVCCAVCNAV 60
                 ************************9 PP
2zf-LSD146.75.2e-157599125
      zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                 CggC+tlL+Y rGA+sV+C++C+tV
  CCG024810.1 75 CGGCHTLLMYIRGATSVQCSCCHTV 99
                 ************************9 PP
3zf-LSD141.81.8e-13113137125
      zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                  Cg+Cr lL+Y +GA+sV+Ca+C++V
  CCG024810.1 113 CGNCRMLLMYQYGARSVKCAVCNFV 137
                  ***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.90.10.106.7E-429134No hitNo description
TIGRFAMsTIGR010531.1E-123363IPR005735Zinc finger, LSD1-type
SuperFamilySSF486955.86E-536134IPR011031Multihaem cytochrome
PfamPF069431.5E-103660IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010539.5E-1572101IPR005735Zinc finger, LSD1-type
PfamPF069431.4E-127599IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010533.0E-12110138IPR005735Zinc finger, LSD1-type
PfamPF069431.1E-12113137IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MPVPLAPYPT PPAPYAPTPP PPPPSAANGA QSQLVCSGCR NLLLYPVGAT SVCCAVCNAV  60
TAVPPPGTEM AQLVCGGCHT LLMYIRGATS VQCSCCHTVN LALEANQVAH VNCGNCRMLL  120
MYQYGARSVK CAVCNFVTPI GVSTSATEEK FTA
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011028205.11e-105PREDICTED: protein LOL1
RefseqXP_011028206.11e-105PREDICTED: protein LOL1
SwissprotQ93ZB15e-80LOL1_ARATH; Protein LOL1
TrEMBLA0A067KEI25e-88A0A067KEI2_JATCU; Uncharacterized protein
STRINGcassava4.1_018557m2e-88(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81873346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.36e-66lsd one like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]