PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG024931.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 286aa    MW: 31964.5 Da    PI: 8.7352
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG024931.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.43.1e-1760111156
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                  + y+GVr +   ++Wv+e+r+p   +k+ r++lg+f ++e+Aa+a++ a+++l+ge
  CCG024931.1  60 PVYRGVRKRN-GNKWVCEVREP---NKKSRIWLGTFTSPEMAARAYDVAALALKGE 111
                  68*****887.9******9998...347*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.1E-1260111IPR001471AP2/ERF domain
PROSITE profilePS5103221.6861118IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-2961120IPR001471AP2/ERF domain
SMARTSM003805.7E-2761124IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-2061120IPR016177DNA-binding domain
CDDcd000184.42E-2862120No hitNo description
PRINTSPR003673.9E-76273IPR001471AP2/ERF domain
PRINTSPR003673.9E-784100IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MEFEKHSSSS ISSLRQNLPC KPCNNPINYI YNLKQAQERP VTVLKKKKAG RKKFKETRHP  60
VYRGVRKRNG NKWVCEVREP NKKSRIWLGT FTSPEMAARA YDVAALALKG ETATINFPDS  120
ALILPRAKSS SARDIRRAAH DAVEAFIPSA SSCSSPSPSH HKNFSCVTSS SKVLSPALSD  180
LNQHEKGIED VFKPSLFGMQ SVEVYGKKAL NDDPFSMVMM SCLNNCSEKV SHQPNALFFD  240
EEALFNMPGL LDSMAEGLIL TPPAMQRGFN WDDMVCSTDL TLWEED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-14591181272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1514590.0EF151459.1 Populus trichocarpa C-repeat binding facor 5 (CBF5) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011005409.10.0PREDICTED: dehydration-responsive element-binding protein 1B-like
TrEMBLA9PL460.0A9PL46_POPTR; C-repeat binding facor 5
STRINGPOPTR_0004s19820.16e-80(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25490.19e-36C-repeat/DRE binding factor 1