PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG025123.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family RAV
Protein Properties Length: 367aa    MW: 41328.2 Da    PI: 9.5944
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG025123.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.76.9e-1470118155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s+ykGV   + +grW A+I++      ++r++lg+f  ++eAa+a++ a+++++g
  CCG025123.1  70 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEENEAARAYDIAARRFRG 118
                  89****9888.8*********3.....5*************************98 PP
2B3103.41.2e-32206307196
                  EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                  f+k+ tpsdv+k++rlv+pk++ae+h      ++++++++ l led sg++W+++++y+++s++yvltkGW++Fvk++ Lk+gD+v F+++   +++l
  CCG025123.1 206 FEKAVTPSDVGKLNRLVIPKQHAEKHfplqstSSNSTKGVLLNLEDVSGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKSLKAGDIVCFQRSTGPDKQL 303
                  89*****************************988889****************************************************886677777 PP

                  EEEE CS
           B3  93 vvkv 96 
                  ++ +
  CCG025123.1 304 YIDW 307
                  7776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.94E-1770126IPR016177DNA-binding domain
CDDcd000181.50E-2670128No hitNo description
PfamPF008472.1E-870118IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-2171127IPR001471AP2/ERF domain
SMARTSM003805.6E-3071132IPR001471AP2/ERF domain
PROSITE profilePS5103220.21871126IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.3E-41201313IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.62E-31204309IPR015300DNA-binding pseudobarrel domain
CDDcd100179.45E-30205296No hitNo description
SMARTSM010197.3E-26206311IPR003340B3 DNA binding domain
PfamPF023621.3E-29206307IPR003340B3 DNA binding domain
PROSITE profilePS5086314.551206311IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048573Biological Processphotoperiodism, flowering
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MDGSCMDESR TSSTDNSISV TPTSIPPFPP TATTTKSPPE SLCRVGSGNS SVILDSESGV  60
EAESRKLPSS KYKGVVPQPN GRWGAQIYEK HQRVWLGTFN EENEAARAYD IAARRFRGRD  120
AVTNFKQVNE TEDDEIEAAF LNAHSKAEIV DMLRKHTYSD ELEQSKRNHR SNNGVNGKQY  180
KNTANYENNS YDHGCGRVLK AREQLFEKAV TPSDVGKLNR LVIPKQHAEK HFPLQSTSSN  240
STKGVLLNLE DVSGKVWRFR YSYWNSSQSY VLTKGWSRFV KEKSLKAGDI VCFQRSTGPD  300
KQLYIDWKAR SGSNQVQPVQ MVRLFGVNIF NVPGMENGCD GKRSMRDMEL LSIDHQYSKK  360
RRIVGAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-5920331411121DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00024PBMTransfer from AT1G25560Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011008525.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription repressor TEM1-like
SwissprotQ9C6M51e-154RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1
TrEMBLB9HWL70.0B9HWL7_POPTR; Uncharacterized protein
STRINGPOPTR_0010s13930.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29203274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.11e-157RAV family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Choi D, et al.
    iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
    Mol Plant, 2014. 7(5): p. 792-813
    [PMID:24380880]
  3. Sgamma T,Jackson A,Muleo R,Thomas B,Massiah A
    TEMPRANILLO is a regulator of juvenility in plants.
    Sci Rep, 2014. 4: p. 3704
    [PMID:24424565]
  4. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  5. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  6. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]