PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG025215.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 389aa    MW: 43537.5 Da    PI: 7.1675
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG025215.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.21.2e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +grWT+eEde l +++   G g+Wk+ ++  g+ R++k+c++rw +yl
      CCG025215.1 14 KGRWTAEEDEALTKYILANGEGSWKSLPKNAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP
2Myb_DNA-binding53.36.3e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ T+eE++ +v++++ lG++ W++Ia+ ++ gRt++++k++w+++l
      CCG025215.1  67 RGNITKEEEDTIVKLHTALGNR-WSLIAAQLP-GRTDNEIKNYWNSHL 112
                      7999******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-20564IPR009057Homeodomain-like
PROSITE profilePS5129415.113961IPR017930Myb domain
SuperFamilySSF466892.36E-2711108IPR009057Homeodomain-like
SMARTSM007175.0E-111363IPR001005SANT/Myb domain
PfamPF002493.8E-131461IPR001005SANT/Myb domain
CDDcd001679.88E-81661No hitNo description
PROSITE profilePS5129425.13862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.7E-2565116IPR009057Homeodomain-like
SMARTSM007172.6E-1566114IPR001005SANT/Myb domain
PfamPF002493.1E-1467112IPR001005SANT/Myb domain
CDDcd001671.10E-971112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051555Biological Processflavonol biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MGRAPCCEKV GLKKGRWTAE EDEALTKYIL ANGEGSWKSL PKNAGLLRCG KSCRLRWINY  60
LRADLKRGNI TKEEEDTIVK LHTALGNRWS LIAAQLPGRT DNEIKNYWNS HLSRKIYSFN  120
RYKNDDSLPS IMDITDVAAG PYKGRRGRTS RSSMKKHNAT LMTLGKPKSP KAIAHEVTEP  180
ASKETAAISP KGTNSPIKSS AAEGPQKEPE NRRNHGVQVQ ESCIDIAKRI DAAGISHCPI  240
NDEKETETLG PYEWLDSEIQ RLEYALQGQV ADPYGNNTVV TLETDNEAPC MSKERENRSG  300
VMGPKRVAVH YLKKQSNSSN GCSSNEESNG EWYNSFSPMN SRFDEEWLDW DWTAVGDLGG  360
WGLLQYEEDN LLTNVSGNDN REGEQGCHR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-22121162105MYB PROTO-ONCOGENE PROTEIN
1h8a_C2e-221211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00598PBMTransfer from AT5G49330Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011009845.10.0PREDICTED: myb-related protein B-like
TrEMBLB9HWW80.0B9HWW8_POPTR; Uncharacterized protein
STRINGPOPTR_0010s15090.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.19e-77myb domain protein 111