PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG025267.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

WRKY

Protein Properties

Length: 371aa MW: 41006.6 Da PI: 7.6081

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG025267.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	104.7	5.1e-33	220	278	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYGqK vk+s++prsYYrCtsagC vkk+vers++d ++v++tYeg+H h+ CCG025267.1 220 LDDGFRWRKYGQKAVKNSPYPRSYYRCTSAGCGVKKRVERSSDDSSIVVTTYEGQHIHP 278 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.6E-34	205	280	IPR003657	WRKY domain
SuperFamily	SSF118290	6.15E-29	212	280	IPR003657	WRKY domain
PROSITE profile	PS50811	32.592	215	280	IPR003657	WRKY domain
SMART	SM00774	5.7E-40	220	279	IPR003657	WRKY domain
Pfam	PF03106	1.6E-26	221	278	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MNEMKENNNI SSVCTNSMEK REGKKELTRT TILKTENFTM ANSSFITPPA TTSDIDQMPS 60 VFALSTTATP PPPPPPLNSI FDMMPCDIIG GDQKAGSLGF IDLLDINQDF GTAASLFDWF 120 AQNPIVGSQQ QQTFVPSPAS TLPETSEVLN NPATPNSSAS ISSSSNEAGN DAFQQVKTGD 180 QEEKHDHDKT KKQLKPKKKN QKRQREPRFA FMTKSEVDHL DDGFRWRKYG QKAVKNSPYP 240 RSYYRCTSAG CGVKKRVERS SDDSSIVVTT YEGQHIHPSP ITPRGSVGIL ADSTGFGAAT 300 SSFVIPQTQY QQHAYMYSSS PSLNITTSNT SFSPTFSFHQ RRSDSPSSLL RDHGLLQDIV 360 PSQMRKEPKE E

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MNEMKENNNI SSVCTNSMEK REGKKELTRT TILKTENFTM ANSSFITPPA TTSDIDQMPS  60
VFALSTTATP PPPPPPLNSI FDMMPCDIIG GDQKAGSLGF IDLLDINQDF GTAASLFDWF  120
AQNPIVGSQQ QQTFVPSPAS TLPETSEVLN NPATPNSSAS ISSSSNEAGN DAFQQVKTGD  180
QEEKHDHDKT KKQLKPKKKN QKRQREPRFA FMTKSEVDHL DDGFRWRKYG QKAVKNSPYP  240
RSYYRCTSAG CGVKKRVERS SDDSSIVVTT YEGQHIHPSP ITPRGSVGIL ADSTGFGAAT  300
SSFVIPQTQY QQHAYMYSSS PSLNITTSNT SFSPTFSFHQ RRSDSPSSLL RDHGLLQDIV  360
PSQMRKEPKE E

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-26	213	280	10	77	Probable WRKY transcription factor 4
2ayd_A	2e-26	208	280	2	74	WRKY transcription factor 1
2lex_A	2e-26	213	280	10	77	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ377451	0.0	GQ377451.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 31 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011010695.1	0.0	PREDICTED: probable WRKY transcription factor 48
Swissprot	Q9FGZ4	4e-57	WRK48_ARATH; Probable WRKY transcription factor 48
TrEMBL	A0A3Q9EF09	0.0	A0A3Q9EF09_POPTO; WRKY DNA-binding protein 48
STRING	POPTR_0010s15750.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1002	34	114

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49520.1	5e-52	WRKY DNA-binding protein 48

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]