PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG025383.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 495aa    MW: 54066.3 Da    PI: 7.7505
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG025383.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.41.4e-33223279259
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  +DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers  d++v+ei+Y+g+Hnh+
  CCG025383.1 223 NDGYNWRKYGQKHVKGSEYPRSYYKCTHPNCPVKKKVERSL-DGQVTEIIYKGQHNHQ 279
                  8****************************************.***************8 PP
2WRKY106.31.6e-33388446159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK+vkg+++prsYY+Ct+agC+v+k+ver+a dpk+v++tYeg+Hnh+
  CCG025383.1 388 LDDGYRWRKYGQKVVKGNPYPRSYYKCTTAGCKVRKHVERAAADPKAVITTYEGKHNHD 446
                  59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.0E-30210281IPR003657WRKY domain
PROSITE profilePS5081123.686217281IPR003657WRKY domain
SuperFamilySSF1182901.83E-26220281IPR003657WRKY domain
SMARTSM007742.4E-37222280IPR003657WRKY domain
PfamPF031061.7E-25223279IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.3E-37374448IPR003657WRKY domain
SuperFamilySSF1182901.7E-29380448IPR003657WRKY domain
PROSITE profilePS5081138.411383448IPR003657WRKY domain
SMARTSM007743.3E-39388447IPR003657WRKY domain
PfamPF031063.3E-26389446IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MTENGKDHQQ PKQQQPSSPS KSLSSRPTTI TLPPRSFTET FFSSGAPGTL GFSPGPMTLL  60
SSFFSDSDDC KSFSQLLAGA IASPNFKTPD DKSSAGDFSS SSSLSIVPPP PMFSMPLGLS  120
PVSLPDSPGF GLFSPQGFGM THQQALAQVT AHAAQANSIM HVQPEYSTPA MSSTFTSTPG  180
AHQQQQMVRS VADSREKIQE LSDFSRSDQR SESSSLAVDK PANDGYNWRK YGQKHVKGSE  240
YPRSYYKCTH PNCPVKKKVE RSLDGQVTEI IYKGQHNHQP PQSNKRGKDT GGLNGNSNSH  300
GNSELDGNVS KERDRKDQES SQATPEHVSG MSDSEEDGDT EAGGEVDEDE PDPKRRSTEV  360
RVTEPASSHR TVSEPRIIVQ TTSEVDLLDD GYRWRKYGQK VVKGNPYPRS YYKCTTAGCK  420
VRKHVERAAA DPKAVITTYE GKHNHDVPAA KNSSHNTVNS NASHLKPQTL EKHASNNSNS  480
QQPAARLRLK EEQIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-42223449878Probable WRKY transcription factor 4
2lex_A2e-42223449878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00260DAPTransfer from AT2G03340Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011012596.10.0PREDICTED: probable WRKY transcription factor 4
SwissprotQ9ZQ701e-173WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A1X9J0V10.0A0A1X9J0V1_POPTO; WRKY transcription factor 3 family protein
STRINGPOPTR_0010s17040.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF154534100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-142WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]