PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG025391.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 247aa    MW: 28210.3 Da    PI: 4.5505
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG025391.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.74.4e-164291255
          AP2  2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                 +y+ Vr+++ +grWvAeI+d       +  r++lg+++ta eAa+a+++a+  l+g
  CCG025391.1 42 RYPRVRQRP-SGRWVAEIKDtI-----QeIRVWLGTYDTAGEAARAYDEAACLLRG 91
                 6889*****.7*********33.....36**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.08E-234193No hitNo description
SMARTSM003801.1E-2142107IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.7E-224297IPR001471AP2/ERF domain
PROSITE profilePS5103217.20142101IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-144397IPR016177DNA-binding domain
PRINTSPR003673.3E-64354IPR001471AP2/ERF domain
PfamPF008472.1E-104691IPR001471AP2/ERF domain
PRINTSPR003673.3E-66581IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MARERKASEG EEEKVSNDGN MAWDQKIEEA GSLHGVRRAR KRYPRVRQRP SGRWVAEIKD  60
TIQEIRVWLG TYDTAGEAAR AYDEAACLLR GANIYSNENF WPCSPSSRSK PALPLKIVNL  120
LLRLKARNNA LIPTTAFPVN QEEQKAREVE ENQFDHFFEM PGQDHRKTGA FEVDDNWSDI  180
DGNGQSEQQE GRGEEEIDMR LIDFQLDDAL GSSCYHPPFD IAQEMMEPME QEHNGDEPPM  240
LGEIMKA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011012725.11e-116PREDICTED: ethylene-responsive transcription factor CRF2-like
TrEMBLB9HIA91e-110B9HIA9_POPTR; Uncharacterized protein
STRINGPOPTR_0008s09080.11e-95(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33383267
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-12related to AP2 11