PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG025463.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 350aa    MW: 39102.4 Da    PI: 8.7104
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG025463.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.91.5e-151373148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.............TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.............kgRtlkqcksrwqkyl 48
                     rg W++eEde+l+++++ +G g+W+++++  g             ++R++k+c++rw++yl
      CCG025463.1 13 RGLWSPEEDEKLIKYIAAHGHGSWSSVPKFAGlkrcgksfpkfagLKRCGKSCRLRWLNYL 73
                     788********************************************************97 PP
2Myb_DNA-binding48.81.6e-1579121145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      rg +++ E++ ++da++ lG++ W+ I+++++ gRt++++k++w+
      CCG025463.1  79 RGCFSAVEEQVIIDAHRILGNR-WSQISKHLP-GRTDNEVKNFWN 121
                      899*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.6E-24576IPR009057Homeodomain-like
PROSITE profilePS5129415.722873IPR017930Myb domain
SuperFamilySSF466891.24E-2610120IPR009057Homeodomain-like
SMARTSM007171.4E-131275IPR001005SANT/Myb domain
PfamPF002496.9E-151373IPR001005SANT/Myb domain
CDDcd001671.16E-101673No hitNo description
PROSITE profilePS5129423.14174128IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.7E-2377128IPR009057Homeodomain-like
SMARTSM007173.1E-1478126IPR001005SANT/Myb domain
PfamPF002492.9E-1379122IPR001005SANT/Myb domain
CDDcd001679.92E-1182121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MGHRCCSKPK VKRGLWSPEE DEKLIKYIAA HGHGSWSSVP KFAGLKRCGK SFPKFAGLKR  60
CGKSCRLRWL NYLRPELKRG CFSAVEEQVI IDAHRILGNR WSQISKHLPG RTDNEVKNFW  120
NSSIKKKLMA QGLDPKTHNL IPSHQRAANK VACNTSPSNH QPFSIISRDS KMKDVSMKIN  180
PPILTLASPY PTNGSTRPSL LQTTTGLPLP TSCYDNPSVI WNVNTQNSYD SSLFPCVSSI  240
ENSLVSPSSS TSVNPTGFGL LDEDCFWSCS NIVEPFEAAK LFESMRPQDQ ENQLNKICDT  300
QIVDKNKGVH VNMDASFGTS SYDLELVDST LFPGSMCRDL SSMDDFSWNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-2991283108B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1826600.0AC182660.2 Populus trichocarpa clone Pop1-125N19, complete sequence.
GenBankAC1878610.0AC187861.2 Populus trichocarpa clone Pop1-1A4, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011014238.10.0PREDICTED: myb-related protein 330-like
TrEMBLB9HYC10.0B9HYC1_POPTR; Uncharacterized protein
STRINGPOPTR_0010s18170.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34663267
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.11e-76myb domain protein 67