PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG025510.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family AP2
Protein Properties Length: 714aa    MW: 78071 Da    PI: 6.4442
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG025510.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.13.4e-11285341155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  CCG025510.1 285 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 341
                  57*******************4444.2455535555.779999**************98 PP
2AP246.68.2e-15384435155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  CCG025510.1 384 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 435
                  57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.57E-14285350IPR016177DNA-binding domain
PfamPF008471.2E-8285341IPR001471AP2/ERF domain
CDDcd000185.09E-17285351No hitNo description
PROSITE profilePS5103217.319286349IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-11286349IPR001471AP2/ERF domain
SMARTSM003802.1E-22286355IPR001471AP2/ERF domain
PRINTSPR003673.9E-6287298IPR001471AP2/ERF domain
PfamPF008471.0E-9384435IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-17384445IPR016177DNA-binding domain
CDDcd000181.47E-24384445No hitNo description
PROSITE profilePS5103219.045385443IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-18385444IPR001471AP2/ERF domain
SMARTSM003801.5E-33385449IPR001471AP2/ERF domain
PRINTSPR003673.9E-6425445IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 714 aa     Download sequence    Send to blast
MASMNNWLGF SLSHQELPPS HSDHQDHSQN TDSRLGFHSD EIPGTNVSGE CFDLTSDSTA  60
PSLNLPATFG ILEAFRNNQS QDWNMKSLGM NPDTNYKTAS GLPILMGTSC NSQTIDQNQE  120
PKLENFLGGH SFGNHEHKLN GCNTMYDTTG DYVFQNCSLQ LPSEATSNER TSSNGGGDNK  180
NSSIGLSMIK TWLRNQPAPT QQDTNNKNNG GAQSLSLSMS TGSQSAASAL PLLAVNGGVN  240
NTGGDQSSSD NNKQQKSTTP SLDSQTGAIE SVPRKSIDTF GQRTSIYRGV TRHRWTGRYE  300
AHLWDNSCRR EGQTRKGRQG GYDKEEKAAR AYDLAALKYW GTTTTTNFPI TNYEKEIEEM  360
KHMTRQEYVA SLRRKSSGFS RGASIYRGVT RHHQHGRWQA RIGRVAGNKD LYLGTFSTQE  420
EAAEAYDIAA IKFRGLNAVT NFDMSRYDVN SILESSTLPI GGAAKRLKEA EHAEIAMDNA  480
QRTDDHDNMG SQLTDGISSY GAVQHGWPTV AFQQAQPFSM HYPYGQRLWC KQEQDSDNRS  540
FQELHQLQLG NTHNFFQPSV LHNLVSMDSS SMEHSSDSNS VVYSSGVNDG TSTGTNGGYQ  600
GIGYGSSAGY AVPMATVISN NDNNHNQGNG YGDGDQVKAL GYENMFSSSD PYHARNLHYL  660
SQQSSAGGIK ASAYDQGSAC YNWVPTAVPT IAARSNNMAV CHGAQPFTVW NDGT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011015029.10.0PREDICTED: AP2-like ethylene-responsive transcription factor BBM2
TrEMBLB9HYI00.0B9HYI0_POPTR; Uncharacterized protein
STRINGPOPTR_0010s18840.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81862840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-130AP2 family protein