PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG025511.2
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family M-type_MADS
Protein Properties Length: 308aa    MW: 34174.2 Da    PI: 9.4198
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG025511.2genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF34.72.3e-1113441243
                 HHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
       SRF-TF 12 tfskRrngilKKAeELSvLCdaevaviifsst 43
                 ++ kR++++ KKA EL +LCd+ v+v+i  +t
  CCG025511.2 13 SYKKRQTTMEKKATELAILCDVPVCVVIKNNT 44
                 899************************97653 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006610.4144IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.01E-10664IPR002100Transcription factor, MADS-box
PfamPF003197.0E-101348IPR002100Transcription factor, MADS-box
ProDomPD0103619.0E-27219279IPR002675Ribosomal protein L38e
PfamPF017813.5E-30219279IPR002675Ribosomal protein L38e
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006412Biological Processtranslation
GO:0005840Cellular Componentribosome
GO:0003677Molecular FunctionDNA binding
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MTPVTGNKGQ EESYKKRQTT MEKKATELAI LCDVPVCVVI KNNTDGRVST LPQDRGQVVD  60
ILFSYKHKLQ AESVAGNAKS KVVKQDETWD PSFNNLPEEK LMEIMKELEE KSKMVDEAIT  120
RKQEVISKKG KGKRIHAGDG STEAGNKKAK GNIVLDSRTT NSSFSTDSGL DSTDSSTSRN  180
TGFPDGVLIP RRLTEGTLAC EIDNGTDVKA LPASTVRPPK QIHEIKDFLL TARRKDARSV  240
KIKRSRDVVK FKVRCSKYLY TLCVFDPEKA DKLKQSLPPV AIHGCDLSCA HAFCTCHLLD  300
LFMPFAPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4v3p_Ln7e-3221927926260S ribosomal protein L38
4v7e_Ck7e-3221927926260S ribosomal protein L38E
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1456951e-97EF145695.1 Populus trichocarpa clone WS0112_L09 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011015058.11e-158PREDICTED: uncharacterized protein LOC105118737
TrEMBLA0A2K1YW431e-126A0A2K1YW43_POPTR; Uncharacterized protein
STRINGPOPTR_0010s18860.11e-127(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2828733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27944.12e-06M-type_MADS family protein